Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0269 ATGGCCGACGAAGCCAAAGCCAAAGGCAACGCAGCCTTCTCCTCCGGCGACTACCCCGCCGCAATTCACCACTTCTCCGACGCCATCGCCTTGGCCCCCACCAACCACGTCCTCTATTCCAATCGATCCGCCGCATACGCTTCTCTCCAAAACTACACCGATGCCTTAGCCGATGCTAAGAAGACCGTTGAACTCAAGCCCGACTGGTCCAAGGGCTACAGCCGTCTCGGCGCTGCGCATCTTGGCCTTTCCCAATACGGCGACGCCGTTTCCGCTTACGAAAAGGGACTCAAAATCGACCCTAATAACGAGCCCCTCAAGTCGGGTTTGGCCGATGCGCAGAAGGCCCTGGCCGCGGCCTCTAGGCCCCGCTCCTCGGCTGCTAATCCTTTTGGTGACGCTTTCTCTGGGCCTGAGATGTGGGCCCGTCTCACGGCGGACCCCACCACTAGGGCTTACCTTCAACAGCCAGATTTCGTGAAGATGATGCAGGATATCCAGAGAGATCCTAACAACCTCAACTTGCACTTGAAGGACCAGAGAATCATGCAGGCCCTAGGGGTTTTGCTCAACGTCAAGATTCAAACACCTCCCACGGGGGCTGACACCGATATGCCGGATTCTCCGTCGCCCTCTGCGGCCGCGTCTGAGAGGAAGAGAGCTGCGGAAGCTGAGCCTGCAAAGCAGCCCGAGTCTGAACCCGAGCCCGAGCCCGAGTCCATGGAATTGACTGGGGAGGAGAAGGGCGCGAAGCAGAGAAAGGCCGAGGCTCTGAAGGAAAAGGATGCGGGAAATGCAGCTTATAAGAAGAAGGATTTTGATACCGCGATTCAACATTACACAAAGGCTTTGGAGTTGGATGATGAGGATATTTCGTATCTCACTAACCGCGCTGCTGTCTACTTGGAAATGGGAAAGTATGAGGAATGCATAAAAGATTGTGACAAGGCTGTTGAAAGAGGAAGAGAACTAAGATCAGATTTTAAGATGATAGCAAGAGCTTTGACAAGGAAAGGAAATGCCTTGGTGAAATTGGCGAAGTGCTCAAAGGATTATGAGCCTGCCATTGAGACATACCAGAAAGCACTCACCGAGCACCGCAACCCTGACACTTTAAAGAAACTTAATGAAGCCGAAAAGGCAAAGAAAGAACTAGAACAACAGGAATATTTTGATCCAAAGTTGGCTGATGAGGAGAGAGAAAAAGGAAACGAATTCTTCAAGCAGCAGAAGTATCCTGAGGCTGTGAAGCATTACACAGAGTCTATACGAAGAAATCCAAAAGATCCTAGGGCTTATAGTAACAGAGCAGCATGCTACACTAAACTGGGGGCAATGCCTGAAGGTTTAAAGGATGCAGAGAAGTGTATTGAACTTGATCCAACCTTCGTAAAGGGTTATACCAGGAAAGGTGCAGTCCAGTATTTCATGAAGGAATACGAGAAGTCTTTGGAGACATATAGGGAGGGGTTGAAATATGACTCTAACAACCAGGAGTTGCTTGAAGGCATTAGAACATGCATACAACAAATTAACAAGGCTAGCCGTGGAGACTTAAGTCCTGAGGAATTGAAGGAGAGACAGGCCAAGGCAATGCAGGATCCCGAAATTCAAAACATCCTTCAAGACCCTGTTATGAGACAGGTATTGATTGATTTCCAAGAAAATCCCAAGGCTGCACAGGAACACACGAAGAATCCAATGGTGATGAACAAGATCCAAAAGCTGGTCAGTGCTGGAATTGTCCAAATGAAGTAA 1758 0.4954 MADEAKAKGNAAFSSGDYPAAIHHFSDAIALAPTNHVLYSNRSAAYASLQNYTDALADAKKTVELKPDWSKGYSRLGAAHLGLSQYGDAVSAYEKGLKIDPNNEPLKSGLADAQKALAAASRPRSSAANPFGDAFSGPEMWARLTADPTTRAYLQQPDFVKMMQDIQRDPNNLNLHLKDQRIMQALGVLLNVKIQTPPTGADTDMPDSPSPSAAASERKRAAEAEPAKQPESEPEPEPESMELTGEEKGAKQRKAEALKEKDAGNAAYKKKDFDTAIQHYTKALELDDEDISYLTNRAAVYLEMGKYEECIKDCDKAVERGRELRSDFKMIARALTRKGNALVKLAKCSKDYEPAIETYQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEEREKGNEFFKQQKYPEAVKHYTESIRRNPKDPRAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFVKGYTRKGAVQYFMKEYEKSLETYREGLKYDSNNQELLEGIRTCIQQINKASRGDLSPEELKERQAKAMQDPEIQNILQDPVMRQVLIDFQENPKAAQEHTKNPMVMNKIQKLVSAGIVQMK* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0269 585 PANTHER TPR REPEAT CONTAINING PROTEIN 1 584 IPR045248 GO:0006457|GO:0030544|GO:0051879
Gso11g0269 585 Gene3D - 516 585 - -
Gso11g0269 585 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Gso11g0269 585 Gene3D - 128 195 - -
Gso11g0269 585 Gene3D Tetratricopeptide repeat domain 254 390 IPR011990 GO:0005515
Gso11g0269 585 ProSiteProfiles TPR repeat profile. 464 497 IPR019734 GO:0005515
Gso11g0269 585 MobiDBLite consensus disorder prediction 197 262 - -
Gso11g0269 585 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 584 - -
Gso11g0269 585 SMART tpr_5 430 463 IPR019734 GO:0005515
Gso11g0269 585 SMART tpr_5 332 369 IPR019734 GO:0005515
Gso11g0269 585 SMART tpr_5 396 429 IPR019734 GO:0005515
Gso11g0269 585 SMART tpr_5 2 35 IPR019734 GO:0005515
Gso11g0269 585 SMART tpr_5 70 103 IPR019734 GO:0005515
Gso11g0269 585 SMART tpr_5 36 69 IPR019734 GO:0005515
Gso11g0269 585 SMART tpr_5 291 324 IPR019734 GO:0005515
Gso11g0269 585 SMART tpr_5 257 290 IPR019734 GO:0005515
Gso11g0269 585 SMART tpr_5 464 497 IPR019734 GO:0005515
Gso11g0269 585 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Gso11g0269 585 Pfam Tetratricopeptide repeat 7 67 - -
Gso11g0269 585 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Gso11g0269 585 ProSiteProfiles TPR repeat profile. 430 463 IPR019734 GO:0005515
Gso11g0269 585 ProSiteProfiles TPR repeat profile. 396 429 IPR019734 GO:0005515
Gso11g0269 585 SUPERFAMILY TPR-like 8 509 IPR011990 GO:0005515
Gso11g0269 585 Pfam Tetratricopeptide repeat 71 103 IPR013105 -
Gso11g0269 585 Pfam STI1 domain 138 191 IPR041243 -
Gso11g0269 585 Pfam STI1 domain 526 577 IPR041243 -
Gso11g0269 585 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Gso11g0269 585 Pfam TPR repeat 403 444 - -
Gso11g0269 585 Pfam TPR repeat 264 305 - -
Gso11g0269 585 SMART CBM 534 573 IPR006636 -
Gso11g0269 585 SMART CBM 137 176 IPR006636 -
Gso11g0269 585 Gene3D Tetratricopeptide repeat domain 395 515 IPR011990 GO:0005515
Gso11g0269 585 ProSiteProfiles TPR repeat profile. 257 290 IPR019734 GO:0005515
Gso11g0269 585 Coils Coil 368 388 - -
Gso11g0269 585 MobiDBLite consensus disorder prediction 218 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0269 Gso-Chr11 2233014 2236931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0269 395 491 U-box Gene Family AT3G07370 28.866 6.34e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0269 K09553 - gmx:100816776 1076.23