Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0262 ATGAAGGGTAGAAGAAAGATTGAAATGAAAAAGATGACAAACAAAAGCAACCTCCAAGTGGCCTTCTCGAAGCGACGTAGTGGGGTATTCAAAAAAGCTAGTGAGCTTTCCACCCTTTGTGACGCTGAGGCTTGTCTTATCATCTTCTCACCAAGTGAAAAGGTCTTCTCTTTTGGTCATCCCAATGTTGACTCAGTGGTACACCGCTACCTTATAGAGGTTGCACCACATGTCACACAGTTCATGGGAGTGAACCTGCATGAATTCAATGCACAACTCACCAAGTTCACCACCCAACTTGAAACTGAGAAGAAACGTGCTAGTGAGCTGAAACGATTGCATAAGGTCGTTCAAACTCAATGGTGGCGGGCAACTCCTACTAATGAGATGACCATTTTGCAATTGAACGAGTTTAAGGGGGCATTACAACAAATGAAGATCAACACCACTCGCAAATCTGAAATGATTCTCATTCATAATGCTATTAACCCCACTTTATTTTTCGCAAACGATAACTTTCTAGCCTAG 528 0.4242 MKGRRKIEMKKMTNKSNLQVAFSKRRSGVFKKASELSTLCDAEACLIIFSPSEKVFSFGHPNVDSVVHRYLIEVAPHVTQFMGVNLHEFNAQLTKFTTQLETEKKRASELKRLHKVVQTQWWRATPTNEMTILQLNEFKGALQQMKINTTRKSEMILIHNAINPTLFFANDNFLA* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0262 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 58 IPR002100 GO:0003677|GO:0046983
Gso11g0262 175 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Gso11g0262 175 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Gso11g0262 175 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Gso11g0262 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 3 150 - -
Gso11g0262 175 SUPERFAMILY SRF-like 3 82 IPR036879 GO:0003677|GO:0046983
Gso11g0262 175 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Gso11g0262 175 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Gso11g0262 175 ProSiteProfiles MADS-box domain profile. 2 62 IPR002100 GO:0003677|GO:0046983
Gso11g0262 175 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Gso11g0262 175 PANTHER MADS BOX PROTEIN 3 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0262 Gso-Chr11 2191282 2191936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0262 2 146 Type I MADS-box Gene Family AT5G60440 50.000 4.68e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso11g0262 SRF-TF 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0262 - - gsj:114376117 350.517