Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0252 ATGGATCCTATTACAGCACATGGTCACTCTCTTCCACCTCCTTTCCACACAGCAAGAGATCTCCACCTCCACCACCAACAGCAACAACACCAGTTCCACTCCTTACAAGAAGACGAGCAAAGTGGAAGCAGCGGAGGCCTAAACCTCGCAGCTCACAAAAGGGAACGCGAAGAAAACAACAACAGCGATGGCAAAGAAGGTGGTGCTGGCTCCGCCGAAACCGAAATTTCAAGAAGACCTCGAGGAAGACCCGCCGGATCCAAGAACAAGCCCAAGCCCCCCATCATCATCACGCGTGACAGCGCCAACGCCCTCAAAACGCACGTCATGGAAGTCGCCGACGGCTGCGACATCGTCGAGAGCGTCTCCGCCTTCGCCCGCCGCCGCCAGAGAGGGGTTTGCATCATGAGCGGCACTGGAACCGTCACCAACGTCACCCTGAGGCAACCTGCTTCTTCCGGCGCCGTCGTCACTCTCCACGGCAGGTTCGAGATCTTGTCCCTCGCCGGATCCTTCCTCCCACCTCCGGCGCCTCCCGAAGCCTCCGGTTTGACCATATACCTAGCCGGAGGACAAGGACAAGTCGTCGGAGGAAGCGTGGTTGGCGCGCTGATTGCTTCGGGGCCTGTGGTTATCATGTCAGCTTCGTTTAGCAACGCTGCGTATGAGAGGCTTCCTTTGGAAGATGAGGAGCCGTCGATTGGGCTTCAGGGAGGAGGTTCGATTGGGTCACCTGGCGGTGGCGGTGGCGTTGGTCAATCGCAGGCACCTCATCAGCTTATGGGGGATTCTACTACAGCGCCTCTTTTCCATGGTTTGAATCCGAATCTTCTGAATTCGGTTCAGATGCCGTCGACGGAGACGTTCTGGGCAACGGGTCGCTCTCCTTACTGCTGA 897 0.5753 MDPITAHGHSLPPPFHTARDLHLHHQQQQHQFHSLQEDEQSGSSGGLNLAAHKREREENNNSDGKEGGAGSAETEISRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDIVESVSAFARRRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLAGSFLPPPAPPEASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDEEPSIGLQGGGSIGSPGGGGGVGQSQAPHQLMGDSTTAPLFHGLNPNLLNSVQMPSTETFWATGRSPYC* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0252 298 SUPERFAMILY AF0104/ALDC/Ptd012-like 102 231 - -
Gso11g0252 298 Pfam Plants and Prokaryotes Conserved (PCC) domain 106 219 IPR005175 -
Gso11g0252 298 Gene3D - 105 234 - -
Gso11g0252 298 PIRSF ESCAROLA 16 297 IPR014476 GO:0003680
Gso11g0252 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 297 IPR014476 GO:0003680
Gso11g0252 298 MobiDBLite consensus disorder prediction 1 96 - -
Gso11g0252 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 7 297 - -
Gso11g0252 298 ProSiteProfiles PPC domain profile profile. 102 240 IPR005175 -
Gso11g0252 298 MobiDBLite consensus disorder prediction 28 47 - -
Gso11g0252 298 CDD DUF296 106 189 IPR005175 -
Gso11g0252 298 MobiDBLite consensus disorder prediction 232 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0252 Gso-Chr11 2102568 2104634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0252 1 297 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 54.360 6.47e-84 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0252 - - gmx:100802044 536.954