Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0247 ATGAGAAGACACCGTGAAATTCATCTCTCTCATGCTCTGTTGTGCACCGTTTTCTGTTTGCTTGTGGCAGCTTCTGCAGCGACTGAGAAGGAAATTTTGCTCGAATTCAAGGGTAACATCACGGAAGATCCACGCGCCAGTTTGAGTTCGTGGGTTTCAAGTGGAAACCTGTGTCATGATTACAAGGGTGTTTCTTGTAATTCCGAAGGGTTTGTGGAGAGAATTGTGCTTTGGAACACTAGCTTGGGAGGGGTGTTGTCCTCATCACTTTCGGGGCTGAAGAGGTTGAGGATATTGACGTTGTTCGGGAACCGTTTCTCAGGTAGTATTCCAGAAGCCTATGGTGATCTTCACTCGTTGTGGAAGATCAATTTGAGTTCCAATGCTTTATCTGGTTCGATCCCTGACTTCATTGGTGATTTGCCTAGCATTCGGTTTCTAGATTTGTCCAAGAATGACTTCACTGGGGAGATACCTTCGGCTTTGTTTAGGTACTGCTACAAAACCAAGTTCGTTTCTCTTTCTCATAACAACCTTGCTGGTTCAATTCCTGCCTCCTTGGTGAATTGCTCCAACCTTGAAGGGTTTGATTTTTCCTTAAACAACCTTAGTGGGGCTGTCCCTTCGCGGCTTTGTGACATTCCAAGGCTGTCATATGTGTCGCTGAGAAGCAATGCCTTGTCAGGGAGCGTGCAGGAGCTCATTTCCACATGCCAAAGTTTGGTACATTTGGATTTTGGTAGTAATAGGTTCACTGATTTTGCTCCATTCCGCGTCCTTCAAATGCAAAATCTTACCTATCTCAATCTATCGTATAATGGGTTTGGAGGACACATTCCTGAGATCAGTGCCTGTAGTGGGAGATTGGAAATCTTTGATGCTTCGGGGAATTCTTTAGATGGGGAGATTCCCTCCAGCATAACTAAATGCAAGAGCTTGAAGCTCTTGGCATTGGAGATGAATAGGTTGGAGGGGATTATCCCAGTGGATATTCAGGAATTGCGGGGACTAATAGTTATCAAATTGGGTAATAATTCCATTGGTGGAATGATTCCCAGGGGCTTTGGCAACGTTGAGCTGCTTGAATTGCTGGATTTGCACAATCTAAACCTCGTTGGCCAAATTCCTGATGATATAAGCAATTGCAAGTTTCTTCTTGGGCTGGATGTTTCTGGTAATAAATTAGAAGGTGAGATTCCTCAGACCCTTTACAACTTGACAAACCTGGAATCTCTTAACCTACACCATAACCAGCTTAATGGAAGCATTCCCCCAAGCCTAGGAAACCTATCAAGGATCCAGTATCTAGATCTGTCACATAATTCACTTTCTGGCCCAATCCTTCCTTCCCTTGGAAATTTAAATAACTTGACACATTTTGATCTCTCATTCAATAATCTCTCTGGTCGCATTCCTGATGTTGCAACCATACAGCATTTTGGTGCATCTTCATTTTCCAATAATCCTTTTCTCTGTGGTCCTCCTTTGGACACCCCTTGCAACGGAGCTAGATCGTCTTCAGCTCCTGGGAAAGCTAAAGTTCTAAGCACCTCAGTAATTGTTGCAATTGTTGCTGCAGCTGTAATTCTCACTGGGGTTTGTTTGGTGACCATCATGAATATGAGGGCACGTGGTAGAAGAAGAAAAGATGATGATCAGATTATGATTGTTGAGAGCACACCTCTTGGATCAACAGAATCAAATGTTATAATTGGAAAGCTGGTTCTCTTCAGCAAAAGCTTACCATCAAAATATGAAGATTGGGAGGCAGGTACCAAAGCATTGCTTGACAAAGAGTCTTTGATAGGTGGTGGATCAATTGGTACAGTCTACCGAACTGATTTTGAAGGCGGCATCTCAATTGCAGTGAAGAAGCTTGAGACTCTGGGAAGGATCAGAAACCAAGAGGAATTTGAGCACGAAATTGGTCGACTAGGCAACCTTCAACACCCTCATTTAGTTGCTTTTCAAGGTTACTATTGGTCATCTTCAATGCAGTTGATTCTATCAGAGTTTGTCCCAAATGGAAATCTGTATGATAATCTACATGGGTTTGGCTTTCCTGGAACCAGTACTAGTAGAGGCAATAGGGAATTATATTGGTCTAGAAGGTTCCAAATAGCAGTGGGAACCGCGAGAGCCCTTGCTTATCTCCACCATGACTGTAGACCTCCAATTCTTCATCTCAACATTAAATCCTCTAACATTCTCCTAGATGACAATTATGAAGCCAAGTTGTCTGATTATGGTTTAGGAAAGTTACTTCCCATTTTGGATAATTATGGTCTGACCAAATTCCACAATGCTGTGGGATATGTTGCACCAGAGTTAGCTCAAGGCCTGAGGCAGAGTGAGAAGTGCGATGTTTACAGTTTTGGAGTCATTCTTTTGGAGCTGGTTACAGGAAGGAGGCCTGTGGAAAGTCCAACCACAAATGAGGTGGTGGTTCTGTGTGAATATGTAACAGGTTTGTTGGAGACTGGCTCAGCTTCAGATTGCTTTGACAGAAATTTACTTGGCTTTGCTGAGAACGAATTGATTCAGGTTATGAGATTGGGGCTAATTTGTACTTCGGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTGTCCAGGTCCTTGAGTCCATTAGAAATGGATTGGAGTCCCATTAG 2655 0.4324 MRRHREIHLSHALLCTVFCLLVAASAATEKEILLEFKGNITEDPRASLSSWVSSGNLCHDYKGVSCNSEGFVERIVLWNTSLGGVLSSSLSGLKRLRILTLFGNRFSGSIPEAYGDLHSLWKINLSSNALSGSIPDFIGDLPSIRFLDLSKNDFTGEIPSALFRYCYKTKFVSLSHNNLAGSIPASLVNCSNLEGFDFSLNNLSGAVPSRLCDIPRLSYVSLRSNALSGSVQELISTCQSLVHLDFGSNRFTDFAPFRVLQMQNLTYLNLSYNGFGGHIPEISACSGRLEIFDASGNSLDGEIPSSITKCKSLKLLALEMNRLEGIIPVDIQELRGLIVIKLGNNSIGGMIPRGFGNVELLELLDLHNLNLVGQIPDDISNCKFLLGLDVSGNKLEGEIPQTLYNLTNLESLNLHHNQLNGSIPPSLGNLSRIQYLDLSHNSLSGPILPSLGNLNNLTHFDLSFNNLSGRIPDVATIQHFGASSFSNNPFLCGPPLDTPCNGARSSSAPGKAKVLSTSVIVAIVAAAVILTGVCLVTIMNMRARGRRRKDDDQIMIVESTPLGSTESNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYRTDFEGGISIAVKKLETLGRIRNQEEFEHEIGRLGNLQHPHLVAFQGYYWSSSMQLILSEFVPNGNLYDNLHGFGFPGTSTSRGNRELYWSRRFQIAVGTARALAYLHHDCRPPILHLNIKSSNILLDDNYEAKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQGLRQSEKCDVYSFGVILLELVTGRRPVESPTTNEVVVLCEYVTGLLETGSASDCFDRNLLGFAENELIQVMRLGLICTSEDPLRRPSMAEVVQVLESIRNGLESH* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0247 884 SMART LRR_typ_2 141 165 IPR003591 -
Gso11g0247 884 SMART LRR_typ_2 262 285 IPR003591 -
Gso11g0247 884 SMART LRR_typ_2 93 116 IPR003591 -
Gso11g0247 884 SMART LRR_typ_2 406 430 IPR003591 -
Gso11g0247 884 SMART LRR_typ_2 454 478 IPR003591 -
Gso11g0247 884 SMART LRR_typ_2 334 357 IPR003591 -
Gso11g0247 884 ProSiteProfiles Protein kinase domain profile. 596 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0247 884 CDD STKc_IRAK 602 877 - -
Gso11g0247 884 Pfam Leucine Rich repeat 262 276 IPR001611 GO:0005515
Gso11g0247 884 Gene3D Ribonuclease Inhibitor 213 508 IPR032675 -
Gso11g0247 884 PANTHER UNNAMED PRODUCT 23 883 - -
Gso11g0247 884 SUPERFAMILY L domain-like 164 496 - -
Gso11g0247 884 ProSiteProfiles Leucine-rich repeat profile. 408 431 IPR001611 GO:0005515
Gso11g0247 884 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Gso11g0247 884 Pfam Leucine rich repeat 388 443 IPR001611 GO:0005515
Gso11g0247 884 SUPERFAMILY Protein kinase-like (PK-like) 597 875 IPR011009 -
Gso11g0247 884 Gene3D Ribonuclease Inhibitor 142 212 IPR032675 -
Gso11g0247 884 Gene3D Ribonuclease Inhibitor 28 141 IPR032675 -
Gso11g0247 884 SUPERFAMILY L domain-like 72 208 - -
Gso11g0247 884 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Gso11g0247 884 Pfam Protein kinase domain 598 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0247 884 Gene3D Transferase(Phosphotransferase) domain 1 677 883 - -
Gso11g0247 884 PANTHER - 23 883 - -
Gso11g0247 884 Gene3D Phosphorylase Kinase; domain 1 596 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0247 Gso-Chr11 2054605 2058572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0247 25 883 Receptor kinase-like Gene Family AT1G62950 66.590 0.0 1118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Gso11g0247 Pkinase 5.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0247 - - gmx:100800970 1719.13