Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0235 ATGCAAGAAGCAGGCTTGGGAATGATGGGTGAGGTCTCCGGCGATCAGCACCGTCAGCTGAAGGCGGAGATAGCGACTCATCCGCTGTACGAGCAGCTTCTGGCAGCACACGTGGCATGCCTCCGTGTGGCGACTCCCATCGATCAGCTTCCACTCATTGATGCTCAATTATCTCAGTCTCACCATCTTCTACGCTCTTATGTCTCACACAACACTCTTTCTCTCTCCCCTCATCACCGCCAAGAACTTGACAACTTCCTGGCACAATATTTGATAGTTTTGTGTACATTTAAAGAACAGCTTCAGCAACATGTCAGAGTCCACGCCGTCGAGGCTGTCATGGCCTGCCGTGATATCGAAAATACCTTACAAGCTCTCACTGGAGTGAGTTTGGGAGAAGGAACTGGTGCAACAATGTCAGATGACGAAGATGATTTACAGATGGATTTTTCTTTAGATCAATCTAGCGCTGAAGGGCATGACATGATGGGATTTGGTCTTCCTACAGAATCTGAAAGGTCATTGATGGAAAGAGTTCGCCAGGAACTAAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTCAGGGAAGAAATATTAAGGAAACGTAGAGCTGGGAAATTGCCAGGTGACACAACTTCTGTGTTGAAGAACTGGTGGCAGCAACATGCAAAGTGGCCTTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATTAATAATTGGTTCATCAACCAAAGGAAACGTAACTGGCACAGCAACTCTCAATCGGTTACTTCTTTAAAGTCCAAACGCAAGAGGTAG 840 0.4643 MQEAGLGMMGEVSGDQHRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYVSHNTLSLSPHHRQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQALTGVSLGEGTGATMSDDEDDLQMDFSLDQSSAEGHDMMGFGLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0235 279 SMART KNOX1_2 18 62 IPR005540 GO:0003677|GO:0005634
Gso11g0235 279 SMART HOX_1 204 269 IPR001356 GO:0003677
Gso11g0235 279 SUPERFAMILY Homeodomain-like 204 269 IPR009057 -
Gso11g0235 279 Pfam Homeobox KN domain 222 261 IPR008422 GO:0003677|GO:0006355
Gso11g0235 279 Pfam KNOX1 domain 20 61 IPR005540 GO:0003677|GO:0005634
Gso11g0235 279 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 279 - -
Gso11g0235 279 Pfam KNOX2 domain 77 127 IPR005541 GO:0003677|GO:0005634
Gso11g0235 279 ProSiteProfiles ELK domain profile. 182 202 IPR005539 GO:0003677
Gso11g0235 279 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 4 279 - -
Gso11g0235 279 ProSiteProfiles 'Homeobox' domain profile. 202 265 IPR001356 GO:0003677
Gso11g0235 279 SMART KNOX2_2 73 128 IPR005541 GO:0003677|GO:0005634
Gso11g0235 279 CDD homeodomain 205 266 IPR001356 GO:0003677
Gso11g0235 279 Gene3D - 201 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0235 Gso-Chr11 1965927 1972064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0235 1 278 Homeobox Transcription Factor Family AT1G62990 79.522 2.17e-170 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso11g0235 KNOX2 4.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0235 - - gmx:100787023 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0423 5 4467866 4474438 Gso11g0235 11 1965927 1972064 PCT
Gso17g1119 17 10678469 10684027 Gso11g0235 11 1965927 1972064 PCT