Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0224 ATGGCCACCACAAGGTCATCGTCCGAGGACATCGTCGATTCCACGCCGCTTCTCGCCAATTCCGCCGGCTCCTCCGACGACCTCACCTCCGGCCGTCGATTCGCGCGGCGTCAGCGGCTCCGGCAGGCGGCTCAGTTCCTCAGGCAAGCGAGCGGGCGCCGGATGATGCGCGAACCGTCGATGCTGGTCCGGGAGGCCGCGGCGGAGCAACTGGAGGAGCGGCAGAGCGATTGGGCGTACTCGAAGCCGGTGGTGGTTCTTGACATCGTGTGGAACTTGGCGTTCGTGGTTGTGGCGGGGACCGTGCTGGTTTTGAGCGCGAGCGAGGCGCCTGGCATGCCTCTGAGGTTGTGGATTGTAGGGTACGCTATGCAATGCGTCCTTCACATGGTTTTCGTTTGCGTCGAATATAGGAGGCGGAGGAGGCAGCAACCCGCTGCCGCCTCGTCAGTGCAAGACAGGGTTGGGAGCAGCAGTGGGAATTTGAGTGTGTCTTCAAGAGAGGGTTCTGCTTCTGCCTCTGCCTCTGCGCAGAATGTGTTGTTGGGCCAACTCGATGACGAGAGTACTAGTGTTGCAAAGCATTTGGAATCAGCCAATACAATGTTTTCATTTGTTTGGTGGATTATTGGATTCTACTGGGTATCAGCTGGGGGTCAAGCATTAGCCCAAGACTCTCCTCAGCTTTACTGGCTATGTATAATCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTGGCATGTATCATTGGAATTGCTGTTTGCTGTTGCCTTCCCTGTATCATTGCACTTCTTTATGCAGTTACAGACCAGGAAGGGGCATCAAAGGAAGACATTGAGCAGTTGTCAAAATTTAAATTCCGAAGAATTGAAAGCAATGAGAAACTTACCGGTACTATACAAGGACCTGTTGGAGGAATAATGACCGAATGCCAGGCTGATTCACCTATTGAACATGCTCTTGCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTTCTTATGATGATGGGGTTGAGCTAAGAGAACTTCCTTGCGGTCACCATTTTCACTGTGTCTGTGTGGATAAATGGCTGTATATTAATGCTACATGCCCCCTCTGCAAGTATAACATCTTAAAAAGTAGCAACCTCAGTCAAGAGGAAGTGTAG 1164 0.518 MATTRSSSEDIVDSTPLLANSAGSSDDLTSGRRFARRQRLRQAAQFLRQASGRRMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVVVAGTVLVLSASEAPGMPLRLWIVGYAMQCVLHMVFVCVEYRRRRRQQPAAASSVQDRVGSSSGNLSVSSREGSASASASAQNVLLGQLDDESTSVAKHLESANTMFSFVWWIIGFYWVSAGGQALAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVTDQEGASKEDIEQLSKFKFRRIESNEKLTGTIQGPVGGIMTECQADSPIEHALAEEDAECCICLSSYDDGVELRELPCGHHFHCVCVDKWLYINATCPLCKYNILKSSNLSQEEV* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0224 387 CDD RING-H2_RNF111_like 331 375 - -
Gso11g0224 387 MobiDBLite consensus disorder prediction 1 30 - -
Gso11g0224 387 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 387 - -
Gso11g0224 387 Pfam Ring finger domain 331 373 IPR001841 -
Gso11g0224 387 MobiDBLite consensus disorder prediction 148 167 - -
Gso11g0224 387 ProSiteProfiles Zinc finger RING-type profile. 332 373 IPR001841 -
Gso11g0224 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 386 IPR013083 -
Gso11g0224 387 SUPERFAMILY RING/U-box 322 379 - -
Gso11g0224 387 MobiDBLite consensus disorder prediction 1 28 - -
Gso11g0224 387 PANTHER TARGET OF ERK KINASE MPK-1 3 387 - -
Gso11g0224 387 SMART ring_2 332 372 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0224 Gso-Chr11 1850233 1855702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0224 14 380 C3H Transcription Factor Family AT1G68070 48.108 6.57e-118 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0224 - - gmx:100800429 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0407 5 4288443 4293088 Gso11g0224 11 1850233 1855702 PCT
Gso17g1100 17 10485226 10490528 Gso11g0224 11 1850233 1855702 PCT