Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0222 ATGGCGCCGTTACCGGCGGAGCAAACCGGTGAATCAGCGCCGACGGAGTTGCAGAGATCCATTCCGACGCCGTTTCTGACCAAGACGTACCAGCTCGTCGATGATCCCTCCGCGGATGACCTAATTTCCTGGAACGAAGACGGCACCAGCTTCATTGTATGGCGACCCGCGGAATTTGCAAGGGATTTGCTTCCTAAGTACTTCAAACACAACAACTTTTCCAGTTTCGTCCGTCAACTTAACACCTATGGGTTCCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCCAACGACTGTTTCCGGCGAGGCGAGAGAGCTCTTCTTCGCGACATACAGCGCCGGAAATTACTGCCGGTTCCGCCTGCAGCCGCGGCACCGGCAGCAGTCACAGCCAATACGGTGACGGTGGCTGTGGCAGCACCGGCGGTGAGAACTGTGTCTCCAACGACTTCCGGCGACGAACAGGTACTATCTTCGAACTCATCTCCGATTGCTGGGAATAATAATAATAATACAGTACACCGCACCACAAGTTGCACCACTGCGCCCGAGCTGTTAGAAGAGAATGAAAGGCTTAGGAAAGAGAACATACAACTGAGTAACGAGTTGAGTCAATTGAAGGGTTTGTGTAATAACATACTCTCTTTGATGACCAATTATGCTTCTGGTTTTAGCCGCCAGCAGTTAGAATCCTCCACAAGCGCTGTGAGGACCGTGCCGGTGCCGGACGGGAAGGCGCCGCTGGAGCTTTTGCCCGCGAAACATGTTTCATCGGCTGATGACGCCCTGCATGTCGGTGGCGCCGCCGGTGCCGCGGCGTGCGCGACGGGGAACGCGGCGGAAGCAGAGGTTCCGAAGCTGTTTGGGGTTTCGATTGGACTGAAACGATGTAGGACAGAGTGCGAGGCCGAACCAGAAGGAGAAGATCAGAATCAGATGCAAACGCGAGCACAAACACAATCACAATCGTCGCAAGAACCAGATCACGGTTCAGATGTGAAATCTGAACCGCTTGATGGTGATGATTCGGATTATCAGGATCATGACCCTCATTGGTTGGAGCTATAG 1068 0.5375 MAPLPAEQTGESAPTELQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERALLRDIQRRKLLPVPPAAAAPAAVTANTVTVAVAAPAVRTVSPTTSGDEQVLSSNSSPIAGNNNNNTVHRTTSCTTAPELLEENERLRKENIQLSNELSQLKGLCNNILSLMTNYASGFSRQQLESSTSAVRTVPVPDGKAPLELLPAKHVSSADDALHVGGAAGAAACATGNAAEAEVPKLFGVSIGLKRCRTECEAEPEGEDQNQMQTRAQTQSQSSQEPDHGSDVKSEPLDGDDSDYQDHDPHWLEL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0222 355 MobiDBLite consensus disorder prediction 148 176 - -
Gso11g0222 355 MobiDBLite consensus disorder prediction 308 328 - -
Gso11g0222 355 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0222 355 MobiDBLite consensus disorder prediction 329 355 - -
Gso11g0222 355 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0222 355 Coils Coil 182 209 - -
Gso11g0222 355 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Gso11g0222 355 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0222 355 Gene3D - 18 115 IPR036388 -
Gso11g0222 355 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 348 IPR027725 -
Gso11g0222 355 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 8 348 - -
Gso11g0222 355 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0222 355 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0222 355 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0222 355 MobiDBLite consensus disorder prediction 303 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0222 Gso-Chr11 1835290 1837477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0222 18 355 HSF AT4G11660 53.143 5.58e-99 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso11g0222 HSF_DNA-bind 1.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0222 K09419 - gmx:100791020 579.326