Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0213 ATGAAGCCTTGCACTTCATTGTTGTTTCTCGCTTTGATTTCCGCGCTCTCGTTTGTGGTTTCTGACATGGTGCCCTCAAACGAAGTTTGGGCGCTTAGGAGCTTCAAAGAAGCTGTGTATGAAGACCCATATCAAGTTTTATCCAATTGGGATACGGTGGAATCAGATCCTTGTAACTGGTTTGGCGTCTTATGCACTATGCTTCGCGATCATGTCATCAAGCTGAACATTTCAGGATCATCATTAAAGGGGTTTCTTGCACCAGAGCTGGGGCAAATCACCTACTTGCAAGAACTAATTTTGCATGGCAACAGTTTCATTGGAACAATACCTAGAGAGTTGGGTGTGTTGGAATCTCTCAAGGTGTTGGATTTGGGAATGAATCAGTTAACGGGACCAATTCCTGCAGAGATTGGAAATCTAACCCAAGTTGTGAAAATAAACTTGCAGTCCAATGGGTTGACTGGTAGGCTACCTCCTGAGCTTGGAAACTTGAGATACCTTCAAGAACTTCAGCTGGATAGGAATAGGCTTCAAGGACCTGTTCCTGCTGGTGGTAGCGCAAATTTTGCTTCAAATATGCATGGGATGTATGCTTCAAAGGAGAATGTAACTGGCTTCTGTCGTTCGTCTCAGTTGAAAGTAGCAGACTTCTCATTTAATTTTTTAGTTGGTAGCATACCCAAATGCTTGGAGTATCTTCCAAGGTTAAACTTTCAAGGGAATTGCCTCCAGGGTCAGGATTTAAAGCAGCGGTCTTCTATACAGTGTGCGGGTGCTTCACCTGCCAGTGCCAAGAGCCAGCCAGTGGTGAATCCAAATCACCAACCTGCTGAATATGTGTCCAAGCATCACAGAGCATCGAAACCTGTTTGGCTTTTGGCTCTAGAAATAGTAACTGGAACTATGGTGGGCTCTCTCTTTCTGGTTGCTGTTCTTGCTGCTTTTCAGAGATGTAACAAAAAATCATCTATCATTATTCCTTGGAAAAAATCTGGAAGCCAGAAAGATCATACGGCAGTATATATAGACCCTGAGTTGTTGAAAGATGTGAGAAGGTATAGCAGACAAGAGCTTGAAGTTGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGATAGTGTGGTGTACAAGGGAACAATGAAAGGTGGGCCTGAGATTGCTGTGGTTTCCCTCTGCATCAACGAGGAGCATTGGACAGGATATCTTGAGCTCTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGTTAGATAATGAGAATATAGGAAAACTGCTGGGCTATTGTAGAGAGGACACTCCATTTACAAGGATGTTGGTTTTTGATTATGCTTCAAATGGGACACTTCATGATCACCTACATTGTTATGAAGAAGGATGCCAATTCTCTTGGACACGGCGTATGAAGATTGCCATAGGCATTGCACGCGGACTCAAGTATTTGCATACAGAAGTGGAGCCTCCATTTACTATCTCAGAGCTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCCCCTAAGTTGGTTGATTTTGAAAGTTGGAAGACAATCCTTGAAAGATCAGAAAAGAATTCTGGTTCCATTGGCAGCCAAGGTGGTGTCTGTATTCTTCCAAATTCCCTTGAAGCACGCCATCTTGATACCAAAGGAAACACATTTGCTTTTGGGGTACTTCTGCTAGAGATAATCAGCGGGAGACCTCCATACTGTAAGGACAAAGGGTACTTGGTGGACTGGGCCAAGGACTACCTTGAAATGCCAGATGAAATGTCACATGTGGTGGATCCTGAACTGAAAATTTTTAGATATGAAGACCTCAAAGTGATATGCGAGGTAATAACTCTTTGTATCAACCCTGATACAACTGTGCGTCCATCTATGCGAGAATTATGTAGCATGCTGGAGAGCAGAATTGACACATCAGTAAGCGTGGAGCTCAAGTCATCATCTTTGGCTTGGGCTGAACTTGCACTTTTATCTTAA 1992 0.4327 MKPCTSLLFLALISALSFVVSDMVPSNEVWALRSFKEAVYEDPYQVLSNWDTVESDPCNWFGVLCTMLRDHVIKLNISGSSLKGFLAPELGQITYLQELILHGNSFIGTIPRELGVLESLKVLDLGMNQLTGPIPAEIGNLTQVVKINLQSNGLTGRLPPELGNLRYLQELQLDRNRLQGPVPAGGSANFASNMHGMYASKENVTGFCRSSQLKVADFSFNFLVGSIPKCLEYLPRLNFQGNCLQGQDLKQRSSIQCAGASPASAKSQPVVNPNHQPAEYVSKHHRASKPVWLLALEIVTGTMVGSLFLVAVLAAFQRCNKKSSIIIPWKKSGSQKDHTAVYIDPELLKDVRRYSRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVVSLCINEEHWTGYLELYFQREVADLARLDNENIGKLLGYCREDTPFTRMLVFDYASNGTLHDHLHCYEEGCQFSWTRRMKIAIGIARGLKYLHTEVEPPFTISELNSSAVYLTEEFSPKLVDFESWKTILERSEKNSGSIGSQGGVCILPNSLEARHLDTKGNTFAFGVLLLEIISGRPPYCKDKGYLVDWAKDYLEMPDEMSHVVDPELKIFRYEDLKVICEVITLCINPDTTVRPSMRELCSMLESRIDTSVSVELKSSSLAWAELALLS* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0213 663 Gene3D Phosphorylase Kinase; domain 1 338 445 - -
Gso11g0213 663 Gene3D Ribonuclease Inhibitor 27 140 IPR032675 -
Gso11g0213 663 Pfam Protein tyrosine and serine/threonine kinase 368 637 IPR001245 GO:0004672|GO:0006468
Gso11g0213 663 ProSiteProfiles Protein kinase domain profile. 364 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0213 663 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Gso11g0213 663 Gene3D Transferase(Phosphotransferase) domain 1 446 653 - -
Gso11g0213 663 Gene3D Ribonuclease Inhibitor 141 263 IPR032675 -
Gso11g0213 663 SUPERFAMILY Protein kinase-like (PK-like) 343 638 IPR011009 -
Gso11g0213 663 PANTHER PROTEIN MALE DISCOVERER 2 6 661 - -
Gso11g0213 663 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 661 - -
Gso11g0213 663 SUPERFAMILY L domain-like 26 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0213 Gso-Chr11 1766274 1771226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0213 1 643 Receptor kinase-like Gene Family AT2G35620 28.485 2.68e-52 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Gso11g0213 PK_Tyr_Ser-Thr 4.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0213 - - gmx:100792145 1307.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0213 11 1766274 1771226 Gso5g1752 5 40822352 40827531 PCT
Gso11g0213 11 1766274 1771226 Gso8g0111 8 1051488 1056736 PCT