Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0206 ATGGATGGGAGAGAAGGCATGGCATTTCCTGGTGGCTCTGCTCCATATTACATGCAGCATAGAGGAGGAGGGGTTGGTGGGTCTGTTCCAGGAACCGGGACACAGAGTGGAGGGTTTCAACCACCCTCTGGCTTTAGAGCTTTGTCAAATGTCTCTCCAGGTTCTGCATTTAAAGTAGAGTCTCAGCCTCAACATGCTAGTTTTAGTCATGGCATTAACACAGGTTCCTCTCCTGATGGTGGAAGTGGAGTGCCTTCTTCTGGTGAGCCTGTGAAGAAGAAAAGAGGGAGGCCTAGGAAGTATGGCCCTGATGGATCTGTTTCCTTGATGCTCTCTCCCATGTCTGCCACTGCTAATTCCACCCCGGGATCGGGCACTTCTTCGGAGAAACGACCCAGGGGGCGCCCACCTGGAAGTGGAAGGAAGCAACAGCTTGCCACTCTAGGTGAATGGATGAACAATTCTGCAGGACTGGCCTTTTCACCTCATGTTATCACCGTTGGAGTTGGGGAGGACATTGTAGCAAAGTTATTGTCATTTGCAAGGCAGAGACCAAGGGCTGTGTGCATCTTAACAGGAACTGGGACAATTTCTTCAGTCACTCTGCGCCAACCCGCTTCTACTAGCATCAGTGTTACATATGAGGGCCGATTTCAAATATTATGCTTGTCTGGTTCTTACTTGGTTGCTGAAGAAGGTGGACCTCACAATAGAACGGGTGGCATGAGTGTTTCCCTTTCTAGTCCTGATGGTCATATCATTGGTGGTGGTGTTACTAGGCTTGTTGCTGCAAGCCCAGTGCAGGTGGTAGCATGCAGTTTCGTATATGGGGGCTCCAAGCCAAAGACTAAAGAAGTGACCACTACCACTACTACTACAAAAGATAGCAGTTCAGAGCCTCAGAGTAGTGATAAGTTAGCGTCTCCAGCCAGTGCTCCTCCACCTAATCAAAACTACACCTCTTCTTCTCCGTCCCCAGGCATTTGGCCTGCATCGTCAAGGCCAGTAGAGGTTAAAAGTGCACATCCACATACTGGTATTGACTTGACGCGTGGGTGA 1059 0.4967 MDGREGMAFPGGSAPYYMQHRGGGVGGSVPGTGTQSGGFQPPSGFRALSNVSPGSAFKVESQPQHASFSHGINTGSSPDGGSGVPSSGEPVKKKRGRPRKYGPDGSVSLMLSPMSATANSTPGSGTSSEKRPRGRPPGSGRKQQLATLGEWMNNSAGLAFSPHVITVGVGEDIVAKLLSFARQRPRAVCILTGTGTISSVTLRQPASTSISVTYEGRFQILCLSGSYLVAEEGGPHNRTGGMSVSLSSPDGHIIGGGVTRLVAASPVQVVACSFVYGGSKPKTKEVTTTTTTTKDSSSEPQSSDKLASPASAPPPNQNYTSSSPSPGIWPASSRPVEVKSAHPHTGIDLTRG* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0206 352 Pfam Plants and Prokaryotes Conserved (PCC) domain 162 275 IPR005175 -
Gso11g0206 352 CDD DUF296 162 274 IPR005175 -
Gso11g0206 352 SUPERFAMILY AF0104/ALDC/Ptd012-like 160 276 - -
Gso11g0206 352 ProSiteProfiles PPC domain profile profile. 157 295 IPR005175 -
Gso11g0206 352 MobiDBLite consensus disorder prediction 1 143 - -
Gso11g0206 352 MobiDBLite consensus disorder prediction 282 352 - -
Gso11g0206 352 PRINTS AT-hook-like domain signature 92 102 IPR017956 GO:0003677
Gso11g0206 352 PRINTS AT-hook-like domain signature 128 139 IPR017956 GO:0003677
Gso11g0206 352 MobiDBLite consensus disorder prediction 29 83 - -
Gso11g0206 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 352 IPR039605 GO:0003680
Gso11g0206 352 MobiDBLite consensus disorder prediction 110 128 - -
Gso11g0206 352 Gene3D - 162 293 - -
Gso11g0206 352 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 352 - -
Gso11g0206 352 MobiDBLite consensus disorder prediction 282 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0206 Gso-Chr11 1739329 1743794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0206 1 352 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 50.131 5.80e-101 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0206 - - gmx:100790569 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0206 11 1739329 1743794 Gso5g1760 5 40854644 40858330 PCT
Gso11g0206 11 1739329 1743794 Gso8g0118 8 1092700 1097129 PCT