Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0196 ATGTCTTCTGATCTCTATACTTTTGACATTTCTTACCAAAGACATTCAAGCCCAGACAACATGGTCTCCTATGATGGAAATGGAAACTTTGTATTTTTCTCTGACCCTCACTCTTTCCCTTTCCTCACTGGCTCACCAATTGATGATGTTGTTCAAGGGAATTTTAACACTTCTCTTGACCCTTTTTCCTCTTCTTTCTGCTCCTTTTCTCCTCAGGAAAACCCTGTGCAACCTCTGTCTAATATAAAGGGTGAGTTTAGAAGTTTCTCTTATTTGCATGGCTCCGAAGTGACAAGTAAGGAATGCCAAATGGGTGTGGATTATACCTACAATCAGCACTTTATTTCTCAAACTTGTCATGGTTCTGAAAGTGCATCAAAGTTAATTCAAAGGAGCTTCAGCTGTACCTCTTTTGATGAGAAGCCTCGTTTCCCCTTTGAACCTCACCCTGACACTCTCATGGATTTTCAATGGCATGCTTTGAACTCCCCTGAAAACACTTTCTTCGCAGCATCAATGAGGAGAGTGTGCAGTACAGGAGATTTGCAGAACATGAAAGCAGCAGATATGTCTCAAACGGAGAGCCCCTTGTTGGAGGAAGGAAACTTCAAAGTAAGGCGTTATAGTGCCGAAGAAAGAAAAGAAAAAATCTCTAAATACAGAGCTAAGAGAAGCCAGAGGAAGTTCAATAAGACTATTAAGTATGCATGCCGAAAGACACTAGCCGACAATAGAACCCGCATACGTGGCAGATTCGCACGCAACGACGAAATCAGAGAGATTCCGAAAGCACCTTGTTCAAGTTCAACCACAGAAGAATATGAAGACGAGTTCTGGGTTGAATTCATTGAAGGATTAAATGAGGAGGTCAACGGTTAG 879 0.4175 MSSDLYTFDISYQRHSSPDNMVSYDGNGNFVFFSDPHSFPFLTGSPIDDVVQGNFNTSLDPFSSSFCSFSPQENPVQPLSNIKGEFRSFSYLHGSEVTSKECQMGVDYTYNQHFISQTCHGSESASKLIQRSFSCTSFDEKPRFPFEPHPDTLMDFQWHALNSPENTFFAASMRRVCSTGDLQNMKAADMSQTESPLLEEGNFKVRRYSAEERKEKISKYRAKRSQRKFNKTIKYACRKTLADNRTRIRGRFARNDEIREIPKAPCSSSTTEEYEDEFWVEFIEGLNEEVNG* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0196 292 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 32 290 IPR045281 GO:0009909
Gso11g0196 292 Pfam CCT motif 213 255 IPR010402 GO:0005515
Gso11g0196 292 PANTHER CCT MOTIF FAMILY PROTEIN 32 290 - -
Gso11g0196 292 ProSiteProfiles CCT domain profile. 213 255 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0196 Gso-Chr11 1642440 1644682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0196 199 260 C2C2-CO-like Transcription Factor Family AT5G24930 41.935 1.11e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso11g0196 CCT 1.7e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0196 - - gmx:100786853 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0196 11 1642440 1644682 Gso5g1785 5 41104827 41107253 PCT
Gso11g0196 11 1642440 1644682 Gso8g0143 8 1323952 1326223 PCT