Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0194 ATGGGATTTCCAGTGGGGTACACAGAGTTGATGCTGCCGAAGGTGTTTCTGCAGGTGCTATCCGTATTGGGCTTGATAAGAAAACTCATCACCGTCCTCTTGTGCTACATGGGCTTCCACGATTTCTTCGAATCCGACATTGCGTGGCCGGAGAGGGCGCCGGAATTCCAGTCGGTGTGGGCGGTGCTCATAAGGGAAATCCTACCGGTGGTGAAGTTCTCGGAGATGGAGATGGAGATGGCGGAGGCGCCGGAGAGCTGCGCGGTGTGTCTGTACGAGTTCGAGGGAGAGGACGAGATCAGACGGCTGACGAACTGCCGCCACATATTCCACAGAGGGTGTCTGGACCGTTGGATGGGATACGATCAAAGAACGTGTCCCCTGTGTCGGACACCCTTCATACCCCACCATATGCAAGCTGCCTTCAATGATAGACTTTGGGCTGCTTCAGGGATTCCTGATTTCTATTACAATCATGAATGA 483 0.5362 MGFPVGYTELMLPKVFLQVLSVLGLIRKLITVLLCYMGFHDFFESDIAWPERAPEFQSVWAVLIREILPVVKFSEMEMEMAEAPESCAVCLYEFEGEDEIRRLTNCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPHHMQAAFNDRLWAASGIPDFYYNHE* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0194 160 SMART ring_2 87 129 IPR001841 -
Gso11g0194 160 CDD RING-H2 87 130 - -
Gso11g0194 160 Pfam Ring finger domain 86 130 IPR001841 -
Gso11g0194 160 ProSiteProfiles Zinc finger RING-type profile. 87 130 IPR001841 -
Gso11g0194 160 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 158 - -
Gso11g0194 160 SUPERFAMILY RING/U-box 86 136 - -
Gso11g0194 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 135 IPR013083 -
Gso11g0194 160 PANTHER BRH1 RING FINGER PROTEIN 1 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0194 Gso-Chr11 1635088 1636236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0194 1 151 C3H Transcription Factor Family AT1G63840 57.962 1.14e-60 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0194 K16281 - gmx:102665617 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0194 11 1635088 1636236 Gso5g1787 5 41117091 41117934 PCT
Gso11g0194 11 1635088 1636236 Gso8g0145 8 1342860 1343710 PCT