Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0192 ATGGCTCGACAAGTGTGTGATGACAAATTATCAACTGGATTCTGCTACTCTGATGTATCATCGGGAAATCCAACGATGTTGGTGAACCAGATCCAAGGCTTTGTGTCAGACCCGGAGATGTACAACCTCACCACGGGCATGGAAATGATAGGGTTTCCAAAGAGTGACACCAACGCTGTCATGTGGAGAAGTTTCATCCCCGAACCGGGTCCTTCTTCTTCCAAAACCATCAACGATTCTTCCACCACTTTCTACCACCACGACTACAACAACAAGAATGCAGATTTCACACCAGCAGGGAATATTTCTGAAACAAGTGCCGAGAATCTAATCGTGGGAAATCACGATTCAGCCCCGTGGCAAGACAACAACAACAACAGATTTGACGATTCTTCTCTAAGGTGTGTGTTTCCTTGTGAAACCAACGAAAGGCCTAGCCAAGGTCTTTCACTCTCTCTTAGTTCAACCAACCCTTCCACTATCGGGTTGCAATCTTTTGAGCTAAGACAAACAGGCCATCATCCTGATTTTGTTTCGTCGAGTTCCAGAGAAGGGTTCTTTGGAAAACCAGTTTCTCTTCAACAGCAACAGATGTTGTCACAAGATGGGTATGTGAGTTCTAATTCTAAAGTTGCAAGTGTTTATCAACAAGGACATTTCCTGGTGAAGAACTCCAAGTTCTTGGTTCCTGCACAGGACCTTCTCAACGAGTTTTGTAGCCTTTGTGCAAAGCAAAGCGACTTGGGAAAGCCAACAAAATCGTTGAAGAAGCAGTGGGAAGATCAGGAAAATAACGGTGTCGGTTCTTCGAAGAAGCATTCTCTGACCTCTCTAGAGTTCGTGGAGTTGCAGAAGAGAAAGACAAAGCTGCTTTCGATGCTGGAAGAGGTTGACAGAAGGTACAAGCACTACCGGAATCAGATGAAGAGTGTGGTGTCATCGTTTGAAGCGGTGGCGGGGAATGGTGCTGCGACAGTGTACTCAGCTTTGGCGTTGAAGGCCATGTCGAGACATTTCAGGTGTTTGAAAGATGGGATTTTGTCGCAGATTCAGGCAACAAGAAAAGCCATGGGAGAGAAAGACCCAGTTGCACCAGGCACAACAAGGGGCGAAACGCCAAGACTTAAAGTCATTGACCAAACACTGAGACAACAAAGGGCGTTTCAGCAAATGAGCATGATGGAAACACATCCTTGGAGACCCCAACGTGGCCTTCCAGAGCGTGCCGTTTCAGTTCTTCGGGCTTGGCTCTTTGAACATTTTCTCCATCCGTACCCAAGCGATGTTGATAAGCATATTTTAGCACGCCAAACCGGTCTCTCGAGAGGCCAGGTTTCGAATTGGTTTATTAATGCAAGGGTGAGACTATGGAAGCCAATGGTAGAAGAAATGTACTTGGAGGAAGTGAAGGATCCTGAGAACAACATAGCTTCCTCAGAAGGGGCTACTGATCAAGACAATGATATAAACCCAAATAATGTTCAATACCCTCCACCTCCTTTATCATCAAGATCAGAGGATCAGAAGCCATCACTGGTTCGAATTGACTCCGAGTGTGCGTCCTCCATCATCAACAACCACAGTACCCCAGATAACAAAAACGATCCAAAGGGCCAAGAACAGTGCTTTGGGTCAGTGGAGCTTGATTTTTCATCATACACACACCACTCCTCGGGCATGGTTTCTTACGGAAGTAGTGATCAGAATGGGAACAACAACCAGAGTGGGGTGTCTTTGACGCTAGGGTTACAGCAACATGGGGTGAGTCTAGCGTTCCCGCCAGCAACACAGAGTTCACTGTACTATCCAAGGGACCAAATTGAAGATTGTCAACCAGTTCATCAGTACTCTCTTTTGGACGGTGAAGGACAAAACCTGCCTTACAGGAATTTGATGGGAGCACAGCTTCTGCATGACTTGGCAGGATAG 1929 0.4635 MARQVCDDKLSTGFCYSDVSSGNPTMLVNQIQGFVSDPEMYNLTTGMEMIGFPKSDTNAVMWRSFIPEPGPSSSKTINDSSTTFYHHDYNNKNADFTPAGNISETSAENLIVGNHDSAPWQDNNNNRFDDSSLRCVFPCETNERPSQGLSLSLSSTNPSTIGLQSFELRQTGHHPDFVSSSSREGFFGKPVSLQQQQMLSQDGYVSSNSKVASVYQQGHFLVKNSKFLVPAQDLLNEFCSLCAKQSDLGKPTKSLKKQWEDQENNGVGSSKKHSLTSLEFVELQKRKTKLLSMLEEVDRRYKHYRNQMKSVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGILSQIQATRKAMGEKDPVAPGTTRGETPRLKVIDQTLRQQRAFQQMSMMETHPWRPQRGLPERAVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRGQVSNWFINARVRLWKPMVEEMYLEEVKDPENNIASSEGATDQDNDINPNNVQYPPPPLSSRSEDQKPSLVRIDSECASSIINNHSTPDNKNDPKGQEQCFGSVELDFSSYTHHSSGMVSYGSSDQNGNNNQSGVSLTLGLQQHGVSLAFPPATQSSLYYPRDQIEDCQPVHQYSLLDGEGQNLPYRNLMGAQLLHDLAG* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0192 642 Pfam Homeobox KN domain 416 455 IPR008422 GO:0003677|GO:0006355
Gso11g0192 642 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 600 - -
Gso11g0192 642 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 10 600 - -
Gso11g0192 642 SMART prehox3 216 348 IPR006563 -
Gso11g0192 642 MobiDBLite consensus disorder prediction 475 512 - -
Gso11g0192 642 Pfam Associated with HOX 222 346 IPR006563 -
Gso11g0192 642 ProSiteProfiles 'Homeobox' domain profile. 396 459 IPR001356 GO:0003677
Gso11g0192 642 MobiDBLite consensus disorder prediction 252 271 - -
Gso11g0192 642 MobiDBLite consensus disorder prediction 476 492 - -
Gso11g0192 642 CDD homeodomain 399 460 IPR001356 GO:0003677
Gso11g0192 642 SMART HOX_1 399 463 IPR001356 GO:0003677
Gso11g0192 642 Gene3D - 402 464 - -
Gso11g0192 642 SUPERFAMILY Homeodomain-like 400 466 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0192 Gso-Chr11 1600079 1604176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0192 86 641 Homeobox Transcription Factor Family AT5G41410 46.003 1.03e-139 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso11g0192 POX 2e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0192 - - gmx:100803088 1292.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0192 11 1600079 1604176 Gso5g1789 5 41149249 41153163 PCT
Gso11g0192 11 1600079 1604176 Gso8g0147 8 1371936 1375971 PCT
Gso17g0735 17 6776497 6780166 Gso11g0192 11 1600079 1604176 PCT