Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0188 ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGACTTTGGTCCCCCGAGGAAGATGAGAAACTCATCAGATACATCACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGTCTTCATGGGGTCGTTGGCAACAGATGGGCTCACATTGCAAGCCACTTACCAGGTAGAACTGACAACGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATTAGAAAGCCTTCTACGGTGACTTCATCAATCACCACTACACAAAGTGTTGATCACCAGCTCCAATTCAATTTTAATTCCAATCAACTAGATCACTATGGCAACCAAGAAAATGTAACAGCAAAGCCACCGGTGCAAGAAACCTTATTTTCCTCGACGTGCCCCCTATTTATGTTTGACACTAGTTCATTAGATCAAGGGACAACAACTGTAGACACCACCAATAATGTACGAGCAGAACTGTTCCAAGATTCATTGGGTTTGAGCAGTAGTGAAACGTGGAACATGAGCCACCATCAAGTCCATGCTCTTCCTCCTCAACTAGCAGCAACTTTTACAGCAACAAACGTTATTGATACTACGAATTATCTGCCACCATTGATAGAGAACGTTGAAAACATGGTGCCAAATATGGAAGTACAGTCTTGTAGTATAGACGAGGAAGGAGAAATGGCACTAGAGTGTTTGCGGAGACAAGATTTGAATGAGTGGGTGGAGAATCAACAACAATGTCCCAGCTTTCTTTTCTGGGACAATATTAATGTTGAAGGACAACTTCGAGGGGAAGAACTAGCACCAAACACGTCAAATATGGGAAACAATACACTTTCACCTTTTCCTTCCTCTTTATTCATTATAAAATGGGAAGAAAGCAGAATTAGGGTTTATATCGCGTATAGTGTGGTAGCAGCAGCTGAGCTTGTTTCCGTCGCCGCTTCACCCACCGTAGCAACCATGATCATTCCCGAGAAGAACCGTAAAGAGATCTGCAAATACCTCTTCCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTTCAATCTGGCAAAGCACCCAGAGATTGATGTGCCGAATCTGCAGGTGATAAAGCTGATGCAGAGCTTCAAATCCAGAGAGTATGTGAGGGAGACATTTGCGTGGATGCACTATTACTGGTTCCTCACCAACGATGGAATTGAGTTCCTCAGGACATACCTCAACCTTCCTTCCGAAATTGTCCCTGCCACTCTCAAGAAGCAGGCCAAGCCCGCGGGAAGACCATTCGGTGGCCCACCCGGTGATCGCCCCAGGGGCCCACCTCGCTTTGACGGAGAGAGGAGATTCGGTGGTGACCGTGATGGATACCGTGGAGGTCCACGCGGACCTGGTGGTGATTTCGGTGACAAGGGTGGAGCTCCTGCTGACTACAGGCCTTCTTTTGGGGGTGGTCCTGGTGGAAGGCCTGGTTTTGGTCGTGGTTCCGGTGGTTATGGTGCACCAACTAGTTCAAACATTCCTTCTTAA 1626 0.4606 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSTVTSSITTTQSVDHQLQFNFNSNQLDHYGNQENVTAKPPVQETLFSSTCPLFMFDTSSLDQGTTTVDTTNNVRAELFQDSLGLSSSETWNMSHHQVHALPPQLAATFTATNVIDTTNYLPPLIENVENMVPNMEVQSCSIDEEGEMALECLRRQDLNEWVENQQQCPSFLFWDNINVEGQLRGEELAPNTSNMGNNTLSPFPSSLFIIKWEESRIRVYIAYSVVAAAELVSVAASPTVATMIIPEKNRKEICKYLFQEGVCFAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGGPGGRPGFGRGSGGYGAPTSSNIPS* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0188 541 CDD SANT 69 112 IPR001005 -
Gso11g0188 541 Pfam Plectin/S10 domain 363 454 IPR005326 -
Gso11g0188 541 Gene3D - 6 66 - -
Gso11g0188 541 PANTHER 40S RIBOSOMAL PROTEIN S10-1-LIKE 278 539 - -
Gso11g0188 541 Gene3D - 68 138 - -
Gso11g0188 541 CDD SANT 17 61 IPR001005 -
Gso11g0188 541 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso11g0188 541 PANTHER 40S RIBOSOMAL PROTEIN S10 278 539 IPR037447 -
Gso11g0188 541 Gene3D - 361 464 IPR036388 -
Gso11g0188 541 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gso11g0188 541 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso11g0188 541 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso11g0188 541 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso11g0188 541 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gso11g0188 541 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso11g0188 541 MobiDBLite consensus disorder prediction 472 488 - -
Gso11g0188 541 MobiDBLite consensus disorder prediction 451 541 - -
Gso11g0188 541 SMART sant 13 63 IPR001005 -
Gso11g0188 541 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0188 Gso-Chr11 1557095 1563456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0188 1 299 MYB Transcription Factor Family AT1G63910 53.125 2.79e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso11g0188 S10_plectin 9.4e-43 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0188 K09422 - gmx:100797787 983.786