Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0184 ATGGATTGGGATTTACAAGCTATTGTGGGATGCACCAAAGCCCCTGCAGCCACCGTGATGGACAACTCGCATCTCATGTTTTTTCAACATTTATGTCCTGAAGAACAAGATGACCTACTTTTCAATTTTCAGGAATTCTCGGAAACCACAACGGTGGTTGATGAGTTAGAAGAGCTTTACAAACCTTTCTACCCTCCTCATGTTCATGTTGATAATAACAACCCTCTTCCCATCGTTGCAAATTCCCTACCTATCCCCGATGAAGAAGTCAAAGAACTCAAACCATCACACAAAGCAGCATCTAGATGTAAAAAAAGCAAGAAGCAGCAGAAGAATAAGAGGGTGGTGACAGCAGCAGATGGTGTTTCGGACCCATGGGCATGGCGTAAATATGGGCAGAAACCAATAAAGGGGTCAGCTTATCCTCGTAGCTATTATAGATGCAGCAGCTCCAAAGGGTGTTTGGCTAGGAAACACGTGGAACGGAGCCAGTTGGATCCTGGAGTTTTGATAGTTACCTACACAGCAGAACACAGCGATCCTCACCCTACATGCAAAAACTCACAACAAAGGAACAACAGTTCCACAACCACAATTGCACCTGCAACTCCAAGAACTCATGATGGCGGAGGCTATCGAAGATGA 645 0.4496 MDWDLQAIVGCTKAPAATVMDNSHLMFFQHLCPEEQDDLLFNFQEFSETTTVVDELEELYKPFYPPHVHVDNNNPLPIVANSLPIPDEEVKELKPSHKAASRCKKSKKQQKNKRVVTAADGVSDPWAWRKYGQKPIKGSAYPRSYYRCSSSKGCLARKHVERSQLDPGVLIVTYTAEHSDPHPTCKNSQQRNNSSTTTIAPATPRTHDGGGYRR* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0184 214 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 2 197 - -
Gso11g0184 214 SUPERFAMILY WRKY DNA-binding domain 118 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso11g0184 214 MobiDBLite consensus disorder prediction 176 214 - -
Gso11g0184 214 ProSiteProfiles WRKY domain profile. 117 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g0184 214 SMART WRKY_cls 122 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g0184 214 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 2 197 IPR044810 GO:0003700
Gso11g0184 214 Pfam WRKY DNA -binding domain 124 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso11g0184 214 Gene3D WRKY domain 104 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso11g0184 214 MobiDBLite consensus disorder prediction 180 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0184 Gso-Chr11 1527412 1528587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0184 2 200 WRKY Transcription Factor Family AT4G01250 41.150 2.31e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso11g0184 WRKY 7.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0184 K13426 - gmx:102669888 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0184 11 1527412 1528587 Gso5g1799 5 41267165 41269047 PCT
Gso11g0184 11 1527412 1528587 Gso8g0158 8 1488231 1489965 PCT