Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0182 ATGGCTACGGTGCCGGAGAAGAAAGCGAAGGAAGCATTCTTCGACGACGAATTCGCTCTGGCCGTTGATCTCTACTCTGAAGCCATACGATTGGATCCCAACGACGCAAATCTCTTCGCGGACAGAGCCCAAGCCCATATCAAACTCAACGCTTTCACTGAAGCCGTTTCCGATGCCAACAAAGCCATCCAATTAAACCCTTCCTTGTCCAAGGCCTATCTTCGTAAAGGCACCGCTTGTATCAAACTCGAAGAATATCACACCGCCAAGGTAGCGCTTCAAAACGGTGCTGCTTTTGCCCAAGATGATTCACGATTCGCCAACTTGATTCAACAATGTGATCGCTTCATTGAAGCAGAGGAATCAAGTGGCCTTACTAGCACCTTATCATCAAATGGGTCCATAACATCTGTACCGTCTGGTAATGGTTCCCATTTCAGCAATAGAAATGATGGGATGACTAAAGAAGCTGAAGGAGACAGTTTGGTATCCCAAAAGAATGAAGCCACACTAAAAAGACCAAAATACAGGCATGAATACTACCAGAAGCCAGAAGAAGTGGTTGTGACACTATTTGCAAAAGGAATATCAGCAAGCGATGTAGTTGTTGACTTCGGTGAACAGATGCTTAGTGTTACTATTGACGTTCCTGGCCAAGATGCCTATCATTACCAACCTCGATTGTTTGGGAAGATCATTCCCAACAACTGCAGAGTTGAGGTGTTGTCAACCAAAATTGAAATCCATCTTGCAAAAGCTGAAGCTATTAATTGGGCATCTCTGGAATATGGCAAGGATATGCTTCCCCCAATAATAAATAGGCCGATAGTTCAATCTGAAAGGTCTGCATATCCATCATCAAAACCGAGGACAAGAGATTGGGATAAGTTGGAAGCTCAAGTGAAAAAAGAGGAGAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAGTAAATTGTTCCGTGATATTTACCAAAATGCAGATGAGGACATGAGGAGAGCAATGAGCAAGTCTTTCTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTGCTCCAGAAGGTATGGAGTTGAAAAAATGGGAGTATTGA 1125 0.4364 MATVPEKKAKEAFFDDEFALAVDLYSEAIRLDPNDANLFADRAQAHIKLNAFTEAVSDANKAIQLNPSLSKAYLRKGTACIKLEEYHTAKVALQNGAAFAQDDSRFANLIQQCDRFIEAEESSGLTSTLSSNGSITSVPSGNGSHFSNRNDGMTKEAEGDSLVSQKNEATLKRPKYRHEYYQKPEEVVVTLFAKGISASDVVVDFGEQMLSVTIDVPGQDAYHYQPRLFGKIIPNNCRVEVLSTKIEIHLAKAEAINWASLEYGKDMLPPIINRPIVQSERSAYPSSKPRTRDWDKLEAQVKKEEKEEKLDGDAALSKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSAPEGMELKKWEY* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0182 374 CDD p23_CS_SGT1_like 179 262 - -
Gso11g0182 374 ProSiteProfiles CS domain profile. 173 262 IPR007052 -
Gso11g0182 374 MobiDBLite consensus disorder prediction 126 168 - -
Gso11g0182 374 PANTHER PROTEIN SGT1 HOMOLOG 1 374 IPR044563 GO:0051087
Gso11g0182 374 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Gso11g0182 374 SUPERFAMILY HSP20-like chaperones 165 272 IPR008978 -
Gso11g0182 374 Pfam Tetratricopeptide repeat 39 68 IPR019734 GO:0005515
Gso11g0182 374 Gene3D Tetratricopeptide repeat domain 2 123 IPR011990 GO:0005515
Gso11g0182 374 Pfam SGS domain 292 372 IPR007699 -
Gso11g0182 374 SUPERFAMILY TPR-like 7 113 IPR011990 GO:0005515
Gso11g0182 374 Gene3D - 174 265 IPR008978 -
Gso11g0182 374 SMART tpr_5 70 103 IPR019734 GO:0005515
Gso11g0182 374 SMART tpr_5 2 35 IPR019734 GO:0005515
Gso11g0182 374 SMART tpr_5 36 69 IPR019734 GO:0005515
Gso11g0182 374 ProSiteProfiles SGS domain profile. 283 374 IPR007699 -
Gso11g0182 374 PANTHER PROTEIN SGT1 HOMOLOG A 1 374 - -
Gso11g0182 374 MobiDBLite consensus disorder prediction 126 150 - -
Gso11g0182 374 Pfam CS domain 177 252 IPR007052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0182 Gso-Chr11 1511024 1515883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0182 12 108 U-box Gene Family AT3G07370 34.021 8.18e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0182 K12795 - gmx:100784022 717.227