Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0175 ATGGAACAGAAAAACGTATTGTTATCGGCGTTGAGTGTTGGGGTGGGAGTAGGAGTGGGAATTGGTTTGGCTGGAAAAGGCGTTACGAAATGGGGTGCTAATGAAAATTCATCTTCAAACGGCGTTACTCCGGAGAACATGGAGCGCGAAATGCTACGACTAGTTGTCGATGGCAGAGAAAGCAAGGTCACTTTTGATCAATTCCCTTATTATCTCAGAGAGCAGACACGGGTCTTGCTAACAAGTGCTGGCTATGTCCATTTGAAGCATGCGGAGGTTTCTAGGCATACGCGGAATCTTGCTCCTGCAAGCCGGACTATTCTGCTTTCAGGGCCAGCAGAACTTTACCAACAAGTGCTTGCCAAGGCTTTAGCTCACTACTTTGAGGCAAAGTTACTTCTGTTAGATTTAACTGACTTTTCACTGAAGATTCAGAGTAAATATGGTTTTGCCAACAAAGAATCTTCTTTCAAAAGGTCTATCTCCGAGACAACTTTGGAGCGGCTATCTGAGCTATTTGGTTCATTTTCTATCTTTCAACAGAGGGGAGAGCCTAAAGGGAATTTCCCCAGGCAACGCAGTGGCGTTGAGCTACTGTCAATGAAGACTGAAGGATCTAATAATCCTACCAAGATGCGTAGGAATGCGTCTGCTTCTGCAAATATCAGTAGCCTTGCTTTACAAAGCAATCCTACAAATTCAGCTCCTCAGAAGCACATAACCAGCTGGCCTTTTGATGAGAAGCTTCTCATACAAACTCTTTACAAGGTTCTAGTTTATGTGTCAAAAACCTATCCCATTGTTCTATACTTGCGGGATGTTGACAATTTGTTGTATAGATCACAAAGGATATATAATTTATTCCAGACAATGCTGAATAAACTACATGGACCAATTTTGATTCTTGGTTCACGAGTTCTAGATTATGGTAGTGACTACAGAGAAGTGGATGAGAGACTTGCTTCCCTCTTCCCCTACAACATAGAAATCAGCCCTCCAGAAGATGAATCTTGTCTTGTCAGCTGGAAGTCTCAATTTGAAGAGGACATGAAGATGATACAGATTCAGGATAACAGGAACCATATCATGGAAGTCCTTGCAGCCAATGATCTTGATTGTGATGACCTGGACTCCATCTGCGTGGCAGATACAATGGTTCTCAGTAACTATATAGAAGAGATTGTCGTGTCAGCAATTTCTTATCATTTAATGAATAGCAAAGATCCTGAATACAGAAATGGCAAATTGGTTATTCCATGCAATAGTTTGTCCCGTGCATTGGGTATATTCCAGGAGGGGAAATTCAGTGTAAATGATACATTAAAATTAGAAGCCCAAGCAGTCACGTCTGAGAGCGAAGAAGGAGCTGTTGGGGAACCAGAAAAAAAGGCAGAAAATCCTGCTCCCGGTATAAAGGCTGAATCAGATACATCAACTTCAGTGGGAAAAACTGATGGTGAAAATGCACTTCCTGTATCCAAAGTTACACAGGAAGTTCCCCCGGACAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCAGCAAACGAGATTGGTGTAAAATTCTCGGATGTTGGTGCCTTAGATGAGACCAAAGAGTCGCTACAAGAACTAGTTATGCTTCCTCTTCGAAGGCCAGACCTTTTCCGCGGAGGCCTTCTAAAGCCTTGTAAAGGAATATTGCTGTTTGGGCCTCCTGGCACCGGGAAGACAATGCTGGCAAAGGCCATTGCGAGAGAAGCTGGCGCGAGTTTCATTAATGTATCCATGTCTACCATCACCTCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTTTATTCACGCTGGCCGCCAAGGTCTCCCCAACTATTATATTTGTTGATGAGGTTGATAGTATGCTGGGACAGCGGACCAGAGTTGGAGAGCATGAAGCCATGCGCAAGATAAAGAATGAGTTTATGACTCATTGGGATGGACTTATGACAAACTCCGGGGAGCGCATCCTTGTTCTTGCTGCAACCAATAGGCCATTTGACCTCGATGAAGCAATAATTAGGAGATTTGAAAGGAGAATTATGGTAGGGATGCCATCTGTCGAGAACAGGGAAAAGATTTTGAGGACTCTTTTGGCAAAAGAGAAGGTGGATGAGAAACTTGATTTTAAGGAAGTCGCAACCATGACCGAAGGATATAGCGGAAGTGATCTCAAGAACTTGTGCACAACTGCTGCTTACAGGCCTGTTAGAGAGTTAATTCAGCAAGAGAGACTAAAGACTCTGGAGAAAAAGCAGAAGGATGCTGGAGGACAGAATAACGATGTCCAAGAAGCTCCGGATACAGAAGAGAAAGTTCAACAAGAAAGAGTTATTACCCTTAGACCTTTGAACATGCAGGACTTCAAAGAGGCTAAGAGTCAGGTTGCTGCAAGCTACGCAGCTGAGGGGGCTGGAATGAGTGAGTTAAAGCAGTGGAATGAATTGTATGGGGAAGGAGGTTCAAGGAAGCAAGAACAGTTATCTTATTTCCTATGA 2520 0.4345 MEQKNVLLSALSVGVGVGVGIGLAGKGVTKWGANENSSSNGVTPENMEREMLRLVVDGRESKVTFDQFPYYLREQTRVLLTSAGYVHLKHAEVSRHTRNLAPASRTILLSGPAELYQQVLAKALAHYFEAKLLLLDLTDFSLKIQSKYGFANKESSFKRSISETTLERLSELFGSFSIFQQRGEPKGNFPRQRSGVELLSMKTEGSNNPTKMRRNASASANISSLALQSNPTNSAPQKHITSWPFDEKLLIQTLYKVLVYVSKTYPIVLYLRDVDNLLYRSQRIYNLFQTMLNKLHGPILILGSRVLDYGSDYREVDERLASLFPYNIEISPPEDESCLVSWKSQFEEDMKMIQIQDNRNHIMEVLAANDLDCDDLDSICVADTMVLSNYIEEIVVSAISYHLMNSKDPEYRNGKLVIPCNSLSRALGIFQEGKFSVNDTLKLEAQAVTSESEEGAVGEPEKKAENPAPGIKAESDTSTSVGKTDGENALPVSKVTQEVPPDNEFEKRIRPEVIPANEIGVKFSDVGALDETKESLQELVMLPLRRPDLFRGGLLKPCKGILLFGPPGTGKTMLAKAIAREAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLMTNSGERILVLAATNRPFDLDEAIIRRFERRIMVGMPSVENREKILRTLLAKEKVDEKLDFKEVATMTEGYSGSDLKNLCTTAAYRPVRELIQQERLKTLEKKQKDAGGQNNDVQEAPDTEEKVQQERVITLRPLNMQDFKEAKSQVAASYAAEGAGMSELKQWNELYGEGGSRKQEQLSYFL* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0175 839 ProSitePatterns AAA-protein family signature. 664 683 IPR003960 GO:0005524|GO:0016887
Gso11g0175 839 MobiDBLite consensus disorder prediction 757 781 - -
Gso11g0175 839 Gene3D - 693 775 - -
Gso11g0175 839 Pfam ATPase family associated with various cellular activities (AAA) 561 691 IPR003959 GO:0005524|GO:0016887
Gso11g0175 839 MobiDBLite consensus disorder prediction 455 469 - -
Gso11g0175 839 MobiDBLite consensus disorder prediction 447 491 - -
Gso11g0175 839 SMART AAA_5 557 694 IPR003593 -
Gso11g0175 839 Pfam AAA+ lid domain 715 756 IPR041569 -
Gso11g0175 839 Gene3D - 520 776 IPR027417 -
Gso11g0175 839 CDD AAA 559 691 - -
Gso11g0175 839 MobiDBLite consensus disorder prediction 472 486 - -
Gso11g0175 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 355 IPR027417 -
Gso11g0175 839 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 839 - -
Gso11g0175 839 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 839 - -
Gso11g0175 839 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 760 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0175 Gso-Chr11 1446778 1453364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0175 471 753 Calmodulin-binding Proteins AT3G56690 34.708 1.33e-42 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0175 - - gmx:100783137 1603.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0175 11 1446778 1453364 Gso5g1808 5 41363383 41372051 PCT
Gso11g0175 11 1446778 1453364 Gso8g0166 8 1582142 1588399 PCT