Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0174 ATGGGGAACTGTAACAGCGAACCCTCTTCCCAAACCCAGCCACATTCCGATCACCACCATCATCACCCCCAACCCTCCAACGGCATCACTGTCCTTCCTCCCAATTCGAAGCCCTCCGTAGGCCGGGTTCTGGGCCGGCCCATGGAGGACGCCCGCTCCACCTACACCTTCGGCCGCGAGCTGGGCCGCGGCCAATTCGGCGTGACCTACCAAGTGACCCACAAACACACGAAACAGCAATTCGCGTGCAAATCCATCGCCACGCGCAAGCTCGTCCACCGCGATGACTTGGAGGACGTCCGGCGAGAGGTGCAGATCATGCACCACCTCACCGGCCACCGCAACATCGTGGAGCTCAAGGGCGCTTACGAGGACCGCCACTCCGTCAACCTCATCATGGAGCTCTGCGGCGGCGGCGAGCTCTTCGACCGCATCATCGCCAAGGGCCACTACTCCGAGCGCGCCGCCGCAGATCTCTGCCGCCAGATCGTGACGGTGGTCCACGATTGCCACACCATGGGAGTGATGCACAGAGATCTCAAGCCGGAGAACTTCCTGTTCCTCAGCAAGGACGAGAACTCGCCGCTTAAGGCCACGGACTTCGGTCTCTCTGTCTTCTTCAAGCCCGGCGATGTGTTTAAGGATCTTGTCGGGAGTGCGTACTATGTTGCTCCTGAGGTGCTGCGCAGAAGCTATGGACCCGGAGCTGATATTTGGAGTGCTGGCGTTATATTGTTCATTTTGCTCTCTGGTGTCCCTCCCTTCTGGTCAGAAAAGGAACAGGGTATATTTGATGCTATTCTTCGTGGCCATATTGATTTCGCATCAGATCCTTGGCCTTCCATATCGAGTAGTGCCAAAGATCTGGTTAAGAAGATGTTACGAGCTGACCCCAAACAAAGACTCTCAGCAGTTGAAGTTCTTAATCATCCTTGGATGAGAGAAGATGGAGCATCTGATAAACCTCTAGATGTTGCTGTTTTATCCAGAATGAAACAATTTAGGGCAATGAACAAGCTAAAGAAAGTTGCTCTGAAGGTTATTGCTGAAAACCTTTCTGAAGAAGAAATCATTGGTTTGAAGGAAATGTTTAAATCCATGGACACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTGCCAAAACTGGGTACTAAGGTTTCTGAGTCTGAAGTAAGGCAATTGATGGAAGCGGCTGATGTGGACGGAAATGGGACCATTGATTACATTGAATTTATAACAGCTACCATGCACATGAATAGAATGGAAAGAGAGGACCACCTATATAAAGCTTTTGAATATTTTGACAAGGATAGAAGCGGGTACATCACAGTGGAAGAGTTGGAGTCTGCCCTTAAAAAATATAATATGGGTGATGAGAAAACAATAAAGGAAATCATTGCCGAAGTTGATGCAGACAATGATGGAAGAATTAACTATGACGAGTTTGTAGCCATGATGAGGAAAGGCAATCCAGATTTAGTAAACAACAGACGTCGCAAATAA 1518 0.4954 MGNCNSEPSSQTQPHSDHHHHHPQPSNGITVLPPNSKPSVGRVLGRPMEDARSTYTFGRELGRGQFGVTYQVTHKHTKQQFACKSIATRKLVHRDDLEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCGGGELFDRIIAKGHYSERAAADLCRQIVTVVHDCHTMGVMHRDLKPENFLFLSKDENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPGADIWSAGVILFILLSGVPPFWSEKEQGIFDAILRGHIDFASDPWPSISSSAKDLVKKMLRADPKQRLSAVEVLNHPWMREDGASDKPLDVAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKVSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDKDRSGYITVEELESALKKYNMGDEKTIKEIIAEVDADNDGRINYDEFVAMMRKGNPDLVNNRRRK* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0174 505 Gene3D - 332 421 - -
Gso11g0174 505 SMART efh_1 359 387 IPR002048 GO:0005509
Gso11g0174 505 SMART efh_1 466 494 IPR002048 GO:0005509
Gso11g0174 505 SMART efh_1 431 459 IPR002048 GO:0005509
Gso11g0174 505 SMART efh_1 395 423 IPR002048 GO:0005509
Gso11g0174 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Gso11g0174 505 CDD STKc_CAMK 55 312 - -
Gso11g0174 505 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Gso11g0174 505 ProSiteProfiles EF-hand calcium-binding domain profile. 427 462 IPR002048 GO:0005509
Gso11g0174 505 ProSitePatterns EF-hand calcium-binding domain. 368 380 IPR018247 -
Gso11g0174 505 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Gso11g0174 505 ProSiteProfiles EF-hand calcium-binding domain profile. 391 426 IPR002048 GO:0005509
Gso11g0174 505 MobiDBLite consensus disorder prediction 1 48 - -
Gso11g0174 505 SUPERFAMILY EF-hand 351 492 IPR011992 -
Gso11g0174 505 PANTHER SERINE/THREONINE-PROTEIN KINASE 9 497 - -
Gso11g0174 505 ProSitePatterns EF-hand calcium-binding domain. 404 416 IPR018247 -
Gso11g0174 505 SUPERFAMILY Protein kinase-like (PK-like) 52 323 IPR011009 -
Gso11g0174 505 Gene3D Transferase(Phosphotransferase) domain 1 141 331 - -
Gso11g0174 505 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0174 505 ProSiteProfiles EF-hand calcium-binding domain profile. 355 390 IPR002048 GO:0005509
Gso11g0174 505 Pfam Protein kinase domain 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0174 505 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0174 505 Gene3D Phosphorylase Kinase; domain 1 57 140 - -
Gso11g0174 505 ProSiteProfiles EF-hand calcium-binding domain profile. 463 497 IPR002048 GO:0005509
Gso11g0174 505 ProSitePatterns EF-hand calcium-binding domain. 440 452 IPR018247 -
Gso11g0174 505 Pfam EF-hand domain pair 360 420 IPR002048 GO:0005509
Gso11g0174 505 Pfam EF-hand domain pair 430 492 IPR002048 GO:0005509
Gso11g0174 505 Gene3D - 338 491 - -
Gso11g0174 505 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 1 9 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0174 Gso-Chr11 1439224 1443924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0174 41 504 EF-hand Containing Proteins AT4G23650 82.366 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso11g0174 Pkinase 1.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0174 K13412 - gmx:100817321 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0174 11 1439224 1443924 Gso5g1811 5 41397086 41403187 PCT