Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0164 ATGACTGCGCCACCGACGAAGTACACTCACCACACCAAACTACTCATACCCCCCGAAGAAGACCCACCCAAACACCATTATCCCAGACTCGTCAGAATAACCGTCACTGACACCGACGCCACCGACTCCTCCAGCGACGAAGAAGAAGAACAAACATACCACTGCAACTCTTCCACGCGCCACCGACATAGGAAGTTCGTCAATGAGATTTCTATCGAGTCGTGCTCCAGCGAGAACGACGGCGTCGTTTCGAGGAAGCGAATTCGAAGAAGAAGCACCACTACGCCCAAAGCGACAAGAGCTTCAGACACTCGGCGCGTGTCCGACGGTAAGAAATTCCGCGGAGTGAGACAGAGGCCGTGGGGAAAATGGGCCGCGGAGATACGAGACCCAGCGCGACGCGTTCGGTTATGGTTGGGTACCTACGACACTGCTGAGGAAGCCGCTTTGGTGTACGACAACGCCGCCATTAAGCTGCGTGGACCCCACGCGCTCACCAATTTCATAACGCCACCTTCCGGGGAGGAAACTCATTGCAATAGCAAGAATATCTTTTCTCCCACTTCCGTGCTTCACTGTTGCTCCTTGTCCGAGGAAGCTGAGTCCGTTACGGCCAAAGACGATGACTACTCCTCGGTGTCGGAGAATAAGGTCAAAGCTGAGTCAGCGTTTCCGCCCGAAATAGATTTTGAGTTTCGAGCTTGTTCGACTGTGCCGGAGAGTCTGTTGTTCTGCGATGATGATTGGTCTAGTGAGTTTCTCAATTCTTATGAAGATTTCGGTTTCAAAAGTTGGCATACGGACAGAAATCGTGACTTTTTCCAAGATATCGACGATTTGTTTGTCTCGGATCCCCTCCTTGCTCTCTGA 870 0.5207 MTAPPTKYTHHTKLLIPPEEDPPKHHYPRLVRITVTDTDATDSSSDEEEEQTYHCNSSTRHRHRKFVNEISIESCSSENDGVVSRKRIRRRSTTTPKATRASDTRRVSDGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAALVYDNAAIKLRGPHALTNFITPPSGEETHCNSKNIFSPTSVLHCCSLSEEAESVTAKDDDYSSVSENKVKAESAFPPEIDFEFRACSTVPESLLFCDDDWSSEFLNSYEDFGFKSWHTDRNRDFFQDIDDLFVSDPLLAL* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0164 289 MobiDBLite consensus disorder prediction 1 56 - -
Gso11g0164 289 MobiDBLite consensus disorder prediction 84 110 - -
Gso11g0164 289 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Gso11g0164 289 MobiDBLite consensus disorder prediction 13 32 - -
Gso11g0164 289 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 4 286 - -
Gso11g0164 289 SUPERFAMILY DNA-binding domain 112 168 IPR016177 GO:0003677
Gso11g0164 289 SMART rav1_2 112 175 IPR001471 GO:0003700|GO:0006355
Gso11g0164 289 Gene3D AP2/ERF domain 111 170 IPR036955 GO:0003700|GO:0006355
Gso11g0164 289 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Gso11g0164 289 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 286 - -
Gso11g0164 289 CDD AP2 111 168 IPR001471 GO:0003700|GO:0006355
Gso11g0164 289 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Gso11g0164 289 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0164 Gso-Chr11 1352040 1353836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0164 1 289 AP2-EREBP Transcription Factor Family AT4G23750 39.130 1.44e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g0164 AP2 4.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0164 - - gmx:100779905 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0164 11 1352040 1353836 Gso5g1820 5 41483140 41484897 PCT
Gso11g0164 11 1352040 1353836 Gso8g0178 8 1707209 1708778 PCT