Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0157 ATGTCCACCACCGCAACTACAACCTCTGAAGAAGTTAGCAGCAATGAGTGGAAAGTCATACACATGAGCGAGCAAGAGGAGGATCTCATTCGCAGGATGTACAAGCTAGTCGGGGACAAGTGGAATTTGATAGCCGGTCGCATTCCCAGTCGTAAAGCAGAAGAAATAGAGAGATTCTGGATTATGAGACACGGTGATGCTTTCTCTGTTAAAAGACACAGAAGTAAAGCCCAAGACTCATGA 243 0.4568 MSTTATTTSEEVSSNEWKVIHMSEQEEDLIRRMYKLVGDKWNLIAGRIPSRKAEEIERFWIMRHGDAFSVKRHRSKAQDS* 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0157 80 Pfam Myb-like DNA-binding domain 23 61 IPR001005 -
Gso11g0157 80 CDD SANT 22 60 IPR001005 -
Gso11g0157 80 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 4 75 - -
Gso11g0157 80 SMART sant 18 66 IPR001005 -
Gso11g0157 80 SUPERFAMILY Homeodomain-like 23 61 IPR009057 -
Gso11g0157 80 Gene3D - 22 80 - -
Gso11g0157 80 PANTHER MYB-LIKE TRANSCRIPTION FACTOR ETC3 4 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0157 Gso-Chr11 1297201 1299859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0157 22 60 MYB Transcription Factor Family AT5G52600 56.410 7.34e-12 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso11g0157 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0157 K09422 - gmx:100527129 150.599