Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0130 ATGGGGTGCATATGCTCAAAAAGCTCTTCAGACGACAAAGAGAAAGTTGATGAATATGAGAAAGAAAAAGAAAAAGAGTCGTCGAACAAGTCTTCTTCTGTGCAAGTGGTTGCTCCTGCTGTCTCAACTGCACAGTTAGATGGTAGCACGAATGGTTCGGGGCCCCGAATGGCTAAGTCATCATCACAAGTGATTAGAGAGTTTGTCAAAGATAATAAAAGCAACAAGAACCACTTAGATGCTGCCACAAGAAGCCAGCACCAGAGGTGCAACACGATGAGCGGTGGTGTAGGTGAAAGAAAGCCACTAATGAGTAGAATCCTTAGCGTGCAACATTTTGCAGGAGAACAACATGTTGATTCTGGATGGCCATTGTGGTTATCTTCAGTGGCAGCAGAAGCCATCAAAGGGTGGATGCCTCGACGGGCAGACTCTTTTGAAAAATTAGACCAAATTGGACAAGGGGCTTATAGCAGTGTGCATAAAGCTCGTGACCTTGAGACTGGTAAAATTGTGGCCTTGAAGAAGGTTCGCTTTTCAAGTACAGAAGCAGAAAGTGTCAAATTCATGGCAAGGGAAATCTATATATTGCGTCAACTCGACCATCCTAATGTCATCAAGCTTGAGGGTATTGTCACGTCTAGAACGTCCACCAGTTTGTACCTTGTTTTTGAATACATGGAGCATGACCTTGCTGGGCTAGCAACTATACATGGCTTCAAGTTAACTGAACCACAGATAAAATGTTATATGCAGCAACTGCTTCGTGGGCTTGAACACTGCCATAGTCGGGGTGTGTTGCACCGTGACATCAAGGGTTCAAATCTTCTGATTGACAACAACGGAAATCTCAAGATTGGAGATTTTGGTCTTTCAATAGTTTGTGATCCTGATAAAAAGCAGCCATTGACTAGCCGTGTTGTGACTCTGTGGTATAGGGCACCTGAGCTTTTGCTAGGTGCTACAGATTATGGGGCTGCAATTGACATGTGGAGTGTTGGTTGCATTCTTGCCGAATTGCTGGTGGGGAAGCCAATCATGCCTGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAGCTTTGTGGTTCGCCATCTGAAGACTATTGGCAGAGAACAAAATTACCCCATGCAACAAGTTTTAAGCCTCAACACCCTTACAACCGCCAAGTTTCCGAAACATTTAAAAACTTTTCTCCCACGGCATCGGCTCTTGTTGATATGCTCCTTACAATAGAACCAGAAGATCGAGGATCAGCAACTTCTGCACTCGAGAGTCAGTTCTTCACGACAAACCCCTTACCTTGTAATCCCTCAAGTTTACCCAAGTTTTCACCAACCAAGGAGTTTGATTCTAAGCGTCGCGAAAAGGAAGCTACAAGGAAAAATGCGGAATCTATTAAAGGACGTGGACCAGCTTCTGTTTATAGGGGAGCAGCAGATACCAAAGTAATGGGTTCACCAAAGTATATTGCTCGGGGAGATATTTCTATGCGGGGCAAGTCAAATACTAGAATGTCCCATGTTAAACATCAATCGGAAGAGGATGGTGAGTCTAACGACAATGGTGAAGCAACCATGATAAGTCTACACAATGCCTACACACAGATGCAGAGCAGTATGGCAGGACCATCCTCATTGAGGAAGAATTCAGAATTACCGACACATCATGCAGCGGCAGAATTTTCTACCTCTTCCGTTAAAAAGGAACCGGGCATGTCTGTTCGTGAACCTGGGGTGGGTTATATGCCGAAGAAAAATAGGATCCACTGCTCTGGACCATTGGGTAGCAACATTGATGACATGCTTAAAGAGCATGAGCGATTAATGCAAGATGTTTTCCGTAGCGTAAAAAAAAACAATCCGTGA 1872 0.4407 MGCICSKSSSDDKEKVDEYEKEKEKESSNKSSSVQVVAPAVSTAQLDGSTNGSGPRMAKSSSQVIREFVKDNKSNKNHLDAATRSQHQRCNTMSGGVGERKPLMSRILSVQHFAGEQHVDSGWPLWLSSVAAEAIKGWMPRRADSFEKLDQIGQGAYSSVHKARDLETGKIVALKKVRFSSTEAESVKFMAREIYILRQLDHPNVIKLEGIVTSRTSTSLYLVFEYMEHDLAGLATIHGFKLTEPQIKCYMQQLLRGLEHCHSRGVLHRDIKGSNLLIDNNGNLKIGDFGLSIVCDPDKKQPLTSRVVTLWYRAPELLLGATDYGAAIDMWSVGCILAELLVGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQRTKLPHATSFKPQHPYNRQVSETFKNFSPTASALVDMLLTIEPEDRGSATSALESQFFTTNPLPCNPSSLPKFSPTKEFDSKRREKEATRKNAESIKGRGPASVYRGAADTKVMGSPKYIARGDISMRGKSNTRMSHVKHQSEEDGESNDNGEATMISLHNAYTQMQSSMAGPSSLRKNSELPTHHAAAEFSTSSVKKEPGMSVREPGVGYMPKKNRIHCSGPLGSNIDDMLKEHERLMQDVFRSVKKNNP* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0130 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Gso11g0130 623 CDD STKc_CDK9_like 146 430 - -
Gso11g0130 623 Pfam Protein kinase domain 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0130 623 SMART serkin_6 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0130 623 ProSitePatterns Protein kinases ATP-binding region signature. 152 175 IPR017441 GO:0005524
Gso11g0130 623 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 73 588 - -
Gso11g0130 623 MobiDBLite consensus disorder prediction 8 29 - -
Gso11g0130 623 PANTHER CELL DIVISION PROTEIN KINASE 73 588 - -
Gso11g0130 623 SUPERFAMILY Protein kinase-like (PK-like) 139 437 IPR011009 -
Gso11g0130 623 MobiDBLite consensus disorder prediction 436 475 - -
Gso11g0130 623 MobiDBLite consensus disorder prediction 493 525 - -
Gso11g0130 623 MobiDBLite consensus disorder prediction 1 98 - -
Gso11g0130 623 MobiDBLite consensus disorder prediction 69 83 - -
Gso11g0130 623 MobiDBLite consensus disorder prediction 448 466 - -
Gso11g0130 623 MobiDBLite consensus disorder prediction 539 571 - -
Gso11g0130 623 Gene3D Phosphorylase Kinase; domain 1 133 228 - -
Gso11g0130 623 MobiDBLite consensus disorder prediction 539 586 - -
Gso11g0130 623 ProSiteProfiles Protein kinase domain profile. 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0130 623 Coils Coil 9 29 - -
Gso11g0130 623 MobiDBLite consensus disorder prediction 30 68 - -
Gso11g0130 623 Gene3D Transferase(Phosphotransferase) domain 1 229 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0130 Gso-Chr11 1043815 1049021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0130 138 469 Core Cell Cycle Gene Families AT5G10270 52.011 1.31e-118 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso11g0130 Pkinase 2.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0130 K08819 - gmx:100817858 1193.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1941 1 56097864 56102599 Gso11g0130 11 1043815 1049021 GST