Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0127 ATGAGTAGGAGTTCGGCGATGCATGGAATTACAAGCACAAACAACAAGTTGAAGGGAGTTCGGCGTCGAAAATGGGGCAAATGGGTGTCGGAGATTCGTGTTCCGGGCACGCAAGAGCGTTTGTGGTTGGGAACCTACGCCACGCCGGAGGCTGCCGCGGTGGCTCACGACGTTGCCGTCTACTGTCTAAGTAGGCCTTCTTCGTTGGACAAACTTAACTTCCCCGAAACCTTGTCTTCGTACAGTGTTCAGCTCAGGGACATGTCTCCGAGGTCTGTGCAGAAGGTGGCTTCCGATGTTGGCATGGATGTTGATGCAAGAAACATTGTTGCGGGCAAAACTTCAACGGTGGGGGCAGAAACTAATTGCGAGAGTGATGAGAGGACTAGTACTGCGTCTGTGTGTAATGTTGTTGGAGAAGGTGGTGCTGATCATTCGGATGTGTTTTGGTGGGATGATGATGGTGGGTCTTGGCATGGAAGTGGTGGAGATTCTACGGAAAGGGATGCCTTGAGCATTTCCATTGAAGATTATCTTTAG 540 0.5074 MSRSSAMHGITSTNNKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYATPEAAAVAHDVAVYCLSRPSSLDKLNFPETLSSYSVQLRDMSPRSVQKVASDVGMDVDARNIVAGKTSTVGAETNCESDERTSTASVCNVVGEGGADHSDVFWWDDDGGSWHGSGGDSTERDALSISIEDYL* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0127 179 Gene3D AP2/ERF domain 16 77 IPR036955 GO:0003700|GO:0006355
Gso11g0127 179 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Gso11g0127 179 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Gso11g0127 179 CDD AP2 16 77 IPR001471 GO:0003700|GO:0006355
Gso11g0127 179 SMART rav1_2 16 81 IPR001471 GO:0003700|GO:0006355
Gso11g0127 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 10 126 - -
Gso11g0127 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 126 - -
Gso11g0127 179 ProSiteProfiles AP2/ERF domain profile. 16 75 IPR001471 GO:0003700|GO:0006355
Gso11g0127 179 Pfam AP2 domain 16 63 IPR001471 GO:0003700|GO:0006355
Gso11g0127 179 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0127 Gso-Chr11 1028016 1029028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0127 14 179 AP2-EREBP Transcription Factor Family AT1G71520 46.429 1.36e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso11g0127 AP2 1.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0127 - - gmx:100816257 339.347