Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0121 ATGGACATGCCTTCTTCAAGTTCAAGCCATGTTGTTGGCGCTGCTTCTTCTGCATACCGTGGCGTCCGTAAGAGGAAATGGGGGAAGTGGGTGTCCGAAATCCGCGAGCCAGGAACCAAGACAAGAATCTGGCTCGGGAGTTTCGAGACTCCCGAGATGGCCGCCGCAGCGTACGACGTCGCCGCCTTGCATTTCAGGGGCCGCGACGCCAGGCTCAACTTCCCTGAGCTTGCCAGCACCCTGCCGCGCCCCGTCAGCAACAATGCCGACCACATACGCATGGCGGCCCACGAGGCCGCTCTCAGGCTCCGGACAAACCCCGCCGCGCCCAACACCGTTGGCTCCGCCGGCTCCGTCTCCGCCGCGCCGCTAACCGTGAGGCTCTCCCCCACTCAGATTCAGGCCATCAATGACTCGCCCATGGACTCACCACAGACTTGGATGCAAATGCCAGACACTTTCATGATGCATGATCAGTCCATGATGTTCGCAAACGGGTATTCCTTTGAGGACAACGAGTGGGAGGATATGCACAATGATTCTCTCTGGGATCCTTAG 558 0.5932 MDMPSSSSSHVVGAASSAYRGVRKRKWGKWVSEIREPGTKTRIWLGSFETPEMAAAAYDVAALHFRGRDARLNFPELASTLPRPVSNNADHIRMAAHEAALRLRTNPAAPNTVGSAGSVSAAPLTVRLSPTQIQAINDSPMDSPQTWMQMPDTFMMHDQSMMFANGYSFEDNEWEDMHNDSLWDP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0121 185 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Gso11g0121 185 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Gso11g0121 185 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Gso11g0121 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 184 - -
Gso11g0121 185 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Gso11g0121 185 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Gso11g0121 185 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Gso11g0121 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF021 9 184 - -
Gso11g0121 185 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Gso11g0121 185 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0121 Gso-Chr11 992804 994411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0121 17 185 AP2-EREBP Transcription Factor Family AT1G71450 62.791 1.64e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g0121 AP2 3.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0121 - - gmx:100815719 376.711