Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0106 ATGGATGAGGGAAAGCATAAATCGAGGAAAGAAAATCATGAGGTGAAAGATGGGGATTCTAAGAGGAGTCACCGCGACCGTGACCGTGATAGAACTGGAGAAAGGGGTAAGGATAAAAACGATGGGAGGCACAGGGATAGGGAGAAGAGGGATCGTGAGTCCCGAAGACATGAGAGAGAGAGTACTGATTCTGAAGACAGGTATGATAGAGACAGGGAGAAGCTCAAAGATAAAGATAAGGATGTGGACCGAGAAAGAGGTCGAGACAAGAAAAGGGAAAGGGACAGGGAAAGGGAGAGGACTGACAGAGTAAGAGAGAAAGAAAGAGAGAGGGAAAGAAAAGAGGATAAGGAGAGGATCAGAGAGAGAGAAAGAGAAAGGAAGGATCATGAGAGAGAGAAGGAAAAGGAAAGAGAAAGGGGGAGGAAAGCACGAGGGAGGGAGAAGCGTAGGGAAGTTGATAGTGATTGCAGTGATGGTGAATCTAAGGAGCGGGATAGAAAGCGGCATAGGAAAGAGGATGGTGATTACAAGAGAGAGAGGGAAAGGAGTGTCAGCAAGCCAAGCAGAAAATCTGAGGAACATGAAGGAAGCCCAAGAAAAAAGAGTGGCGGAGATGATTCAGATACCAAAGATGAAGAGAAAAAACCTACCCGTGAAGAGGAGATGGAGGATGAACAAAAGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGGAGGAAGAGGGAAGAAGCAGAAAGAGAAAAACACGGTGAAGCAAGTGCTAATGAACCTGAGTCTGGAAAGACCTGGACGCTTGAAGGGGAATCTGATGATGAAGAAGGACCAGGTACTGGGAAGCAGACAGGTATGGATGTTGATGAAGATGACAAACCTGCTGATAAGGAGCCTAAGGATGTGATGGTGGTAGATACTGTTAATGGGACAATTGCATCTGATTTACAGGATGGACCTGCTGGTGCTCCTGAAGAGGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTAAACAATGCTGTGACATCGTCACTTTCTGGTAAAGCCATCGACGTAAAACCCAAGGATAAAGGGAATAGGCAAAATCGTGGTGCACAGTCAAGGAAAGTTTCAAATAAGTCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGCAGATGATGAAGTGGAGAAGGATCCATTGGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAGACAAAAGCTGAGAAGCTTTCTTTGGTTGACCACTCAAAGATCGTCTATGAACCATTCAAGAAAAACTTTTATATTGAAGTGAAGGAGGTCTCGAAGATGACTCCTGAAGAATCTGCAGTATACAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCAATAAAATCATGGCACCAGACTGGACTTGCTAGCAAAATTTTGGAGACAATAAAGAAGATGAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCGCTCCCTGTAATCATGAGCGGTCGAGATTGCATAGGGATTGCTAAAACTGGGTCAGGCAAAACACTTGCTTTTGTTCTGCCAATGCTGAGGCATATCAAGGATCAGCCACCCGTTGTTGCTGGAGATGGACCTATTGGGCTCATTATGGCCCCTACAAGGGAACTAGTTCAACAGATTCACAGTGATATAAAGAAATTTGCTAAGGTACTGGGTCTGAGGTGTGTGCCTGTGTATGGAGGATCTGGTGTTGCTCAACAAATTAGTGAGTTGAAACGTGGTGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGTACCAGTAGTGGAAAAATAACTAACTTGCATAGAGTAACTTATCTGGTAATGGATGAGGCTGATCGAATGTTTGACATGGGTTTTGAACCTCAAATCACACGTATTGTTCAGAATATTCGTCCAGATCGTCAAACAGTTCTGTTTTCTGCTACTTTCCCCCGTCAGGTTGAAATTCTGGCTCGTAAGGTCTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGACATAACACAGCTAGTTGAGGTGAGGCCAGATAATGAAAGGTTCCTTAGACTCTTAGAAATATTGGGGGAATGGTATGAAAAAGGAAAGATTTTGATATTTGTTCACTCACAGGAGAAATGTGATAGTTTGTTCAAAGATCTGCTCAGGCATGGTTATCCCTGCCTTTCTCTTCATGGGGCCAAGGACCAGACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTATTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGATGTTAAGGAGCTTGAATTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACTGGACGAGCTGGCCGGAAGGGTTGTGCCATTACATTTATTTCTGAGGAAGAGGCAAGATATGCACCTGATCTGCTGAAAGCCTTGGAGCTATCTGAGCAGACTGTTCCAAATGATCTGAAAGCTCTTGCTGGTAGCTTTATGGCAAAAGTTAATCAAGGACTGGAGCAAGCTCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGCGGAAAGCAGCAAAGAAAGCACAAGCCAAGGAATATGGGTTTGAAGAAGAGAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCTGGCGGTGATATCTCACAGCATTCTGCTTTTGCTCAGATTATCGCTGCCACTAAAGGTAATGTTCCTGCATTGCCTACTCCAATGCTCCTACCATCCTTGCCAGTTTTGCCTGGGACAGGGCTACCTCTTCCTGCAAACGAGGGGGCGGCTCGAGCAGCAGCAATAGCTGCTCTAAACTTGCAGGACAAATTAGATAAAATACGATCAGAAGCATTACCAGAGCATTACGAGGCTGAGTTGGAAATAAATGATTTTCCCCAAAATGCTCGCTGGAAAGTTACACACAAGGAAACTTTAGGCCCTATTTCTGAATGGAGTGGAGCTGCAATTACCACCAGGGGGCAGTTTTTCCCACCTGGCAAAATCCCAGGACCCGGGGAACGCAAACTCTACTTGTTCATTGAAGGTCCTACTGAGCATTCTGTTAAGTCAGCTAAAGCAGACTTGAAGCGCGTTTTGGAAGACATCACAAATCAGGCTATGCAACTTCCTGGTGGAACTCAACCAGGCAAATACTCTGTTGTGTAA 3324 0.4413 MDEGKHKSRKENHEVKDGDSKRSHRDRDRDRTGERGKDKNDGRHRDREKRDRESRRHERESTDSEDRYDRDREKLKDKDKDVDRERGRDKKRERDRERERTDRVREKERERERKEDKERIRERERERKDHEREKEKERERGRKARGREKRREVDSDCSDGESKERDRKRHRKEDGDYKRERERSVSKPSRKSEEHEGSPRKKSGGDDSDTKDEEKKPTREEEMEDEQKRLDEEMEKRRRRVQEWQELRRKREEAEREKHGEASANEPESGKTWTLEGESDDEEGPGTGKQTGMDVDEDDKPADKEPKDVMVVDTVNGTIASDLQDGPAGAPEEEEIDPLDAFMNSMVLPEVEKLNNAVTSSLSGKAIDVKPKDKGNRQNRGAQSRKVSNKSIGRIIPGEESDSDYADDEVEKDPLDEDDDEFMKRVKKTKAEKLSLVDHSKIVYEPFKKNFYIEVKEVSKMTPEESAVYRKQLELKIHGKDVPKPIKSWHQTGLASKILETIKKMNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFAKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLHRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPDNERFLRLLEILGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLLKALELSEQTVPNDLKALAGSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEEKSDSEDEDEGIRKAGGDISQHSAFAQIIAATKGNVPALPTPMLLPSLPVLPGTGLPLPANEGAARAAAIAALNLQDKLDKIRSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWSGAAITTRGQFFPPGKIPGPGERKLYLFIEGPTEHSVKSAKADLKRVLEDITNQAMQLPGGTQPGKYSVV* 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0106 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 867 IPR027417 -
Gso11g0106 1107 Pfam Helicase conserved C-terminal domain 721 829 IPR001650 -
Gso11g0106 1107 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 724 868 IPR001650 -
Gso11g0106 1107 SMART ultradead3 506 711 IPR014001 -
Gso11g0106 1107 Gene3D - 440 696 IPR027417 -
Gso11g0106 1107 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 156 939 - -
Gso11g0106 1107 SMART helicmild6 748 829 IPR001650 -
Gso11g0106 1107 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 642 650 IPR000629 -
Gso11g0106 1107 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 518 696 IPR014001 -
Gso11g0106 1107 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 487 515 IPR014014 GO:0003724
Gso11g0106 1107 MobiDBLite consensus disorder prediction 402 417 - -
Gso11g0106 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 698 IPR027417 -
Gso11g0106 1107 MobiDBLite consensus disorder prediction 273 310 - -
Gso11g0106 1107 Coils Coil 97 147 - -
Gso11g0106 1107 MobiDBLite consensus disorder prediction 360 419 - -
Gso11g0106 1107 Pfam DEAD/DEAH box helicase 512 683 IPR011545 GO:0003676|GO:0005524
Gso11g0106 1107 Gene3D - 697 871 IPR027417 -
Gso11g0106 1107 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 156 939 - -
Gso11g0106 1107 CDD SF2_C_DEAD 708 838 - -
Gso11g0106 1107 MobiDBLite consensus disorder prediction 903 917 - -
Gso11g0106 1107 MobiDBLite consensus disorder prediction 1 265 - -
Gso11g0106 1107 MobiDBLite consensus disorder prediction 903 932 - -
Gso11g0106 1107 MobiDBLite consensus disorder prediction 1 310 - -
Gso11g0106 1107 Coils Coil 220 257 - -
Gso11g0106 1107 CDD DEADc_DDX46 476 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0106 Gso-Chr11 869249 873404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0106 474 849 Eukaryotic Initiation Factors Gene Family AT3G19760 31.842 1.05e-56 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0106 K12811 - gmx:100806467 1823.14