LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso11g0094	ATGGGCCTATATGGGATCTGGCCTGCTGGGCCCAATTCCCAGCCGTTAAGTCTCGGACTCGATCGTGATCGTGCCACGAGCAGACAGTTAGTAACGCACTCATGCGGACGCATAGATAGATATAACACCAAATTACTCTTTCTTCTTTTTCTTGTCTTCTCTGTTGGGAGCAACGTTGCAATTAATCAAAGTGCAATATTTACAAACTGTTTTCAAATTTCCGTATGGTGCCTCATGGATCCTTTTGATGATATTCTACCAACGGCTCCTGCTGCACGTACTCGGCTGGGTGCCAAGTTTATTCCAAAGGCCAAATCGAAACAGTTTCCTCGAAAGGGAATACCAGCATCAGAACATTCCACCTCATCTAAAGATGGAATTTCGGGAAATGAATGTCAAAATGCAGTTGCTTCAGCTTTAAGTATGCCAGCGGAAGAACCTAAGGGGTCCGTTCATCATACACAGGTAGAAATTCCAAATTCAGAGGATTCCACAAATCGTAAACAAGTTAGTGTGAAAGGAGATAGTGCAGCCTTGGTAGATGATTCCACAATCACCGCAACTGAAGTTGATGCTGATCAGAAATCTATGAACTTTTTAAAACCAATATGTGAGGTTACTGAGGGAGATCCAGTATATTTTGAGGGGGCCTCAGTCACTAGCTTCGTTCCTGAGACTAACCTCAATAATGGCACAACACAACCAGTTCACCCTGCTAATGCTGTAGAAAATGAATTTAATGTGGCTGCTCCATCTGCAACTTGCTCAGCCATAGATAGGATGAAAGAACAACCTAAAATTGGGGAAGGTTCATTTCTTGATAGCAACAAGCTTATTGACAATTCAATCCAAGTTGGCACGGATTTGGGCTTCCAAGGTTCTTCAGATGATAAGATTGCAATAATTCAGAGCAACTTTGATTCAAAGTCAAACTTTGGAAAAAAACAAGAGGGAGTATCTGCAGAATTTGAATTGGATCCTTTCAGCAACATACTCCCTTATCCTGGTGCTGGGAATGTTCATAAATTTAAACCCAAGATTAAGCCACGACCTAGAGTTAGCAATGTGCCAGCAATTGCTTCTGATTCATCTAATGTTATGATGGAAAAATCTGTTGAATTGCCTACATCTTGCACAAACGACTTTCAATTTTTTCAGTCTTGTGGTGATGGCAGTGGTGGACTAAACCAATCAGCCAGTTTACCTTTGCCAACATCAGAGATTCTTAGGACAACTGAATTACCTGATAAGTTTGATGATACTAGCTCAAGTATTCTCTCTGAAGACAATAAGAGCTTGGCAGCTGCAATTCCTTCCCAACTGGATTCCCTAAATGCCATGCTTTCAGAGGATGCAGTTCATAATGGAACTACAGATTGGCCTTCTAGCTTTGGTAAATCATCCAGAGAGGCTGCAGACATTTTTTCTGGGCTGGAATCCCTTGATGATTTTCTCACCCAGGCTGCCACTGGTACAGGAAAACCAGCCCTTCATTCTTTTAATGGGAAGGGTGGAGAGGAAAATTTTGTCACACCTGCTCCTAGTTCCATTAACTCTTTTGGGGAATGTGATACTACCCAAGTTCAAAGGTGTCCCGAGTATCATACTCCTCAAGATTCATTAACCTTCAATGAAGCTGCAGTCTTCAATGAGGATGATATTCACACTAGCAATAGGAGGTTGGAAACAGAGGAAATTGTGGACTTGAATCCTGCCTGCCCAGGTGATGATGTGATTGATTATCAATCCATGAAATCTGGCGAAGATCCAACTTTGGGAATTCCAGTGCATGAAGAGTTGACAAATGCTGCAGATAGTCCCACATTGGCTGATTTTTTGCATGCAGATGTTACAAGGGAAAAAGAAGATTCCAATAAGAGAAAAAAGGATGGCTCAACATCATGTTCTCTAAGGAAGAACAGAAGATGTATTGCTGGTGAGGAGGATAAAGGTGCTAAAACCTCAAGGCAGCTGAGAAAACAAGCAGCTCGTAAACCTGCAAACAGTTCACTCAATGAGGATGTTGAAGATAATAATGACCTTGACCCTTCTTATAATTCTAATGGAGATGAACTTCAAGAAAATGATGACGAGTATGAAGTTGATTATCCATCCAGGAAGAGAAGAGTATCAAATAGTTCACAGAAGAAACCTGTGGCTAAAAGTGGAAAAACATCTCAAAAGCCTAAGAAGGCTAATGATGATTTAGAAAAAACTGAGGAACCTCCCAAAAAGTTCTCTCATTCAACCCGACGAAGAAAAAGATGCGTGGACAAGGCTCTGCTGGAAATTCCTGAGGATGAACTTGATCGTCTAAATATACCTATTAAGGATATTATTTTACTTGAAGAACATAGGGAGCGGCTGGCGAAAAAAGAGGCGATGACTTCAAATACTTCTTCCACCAACCAAAGTGGTGGAGATTCTCTTCATGAGGCTGGTTCTTATAATGAAGGGGCTTATGATGATGGAGCTTATGATGATGGGGCTTATAATGATGAGGAGTTCTTAGGTTCAGAAGATGGTAGAGACCCATATGATAATCAGGCCAATGAAGGGATCACATCAACTTCCGTTTTACTCAATTACCAGTCTTTCAGGGAAAAGAAGACACCTAGGGGAAAATGGTCAAAACAAGAAACTGAACTGTTTTATGAGGCTGTTAGGGAGATGGGAACAGATTTTTCTGTGATACAAAAGACTTTTTTCCCTGATAAAACACGGCATCAAATTAAGTTGAAGTACAAGAAGGAAGAGCGGCAGCAGCCTTTACAGCTAACCGATGCTGTAAATAACAGTGCAAAAGATCATCCTCATTCTAAGTTGTTTATTGAACTACTAAAACTAGCTTCCACCAAGGCAGAAGAATACCCCGGTAGAGATGCCTCAGATTTGGTGATGGCGGAGGAGGTTGTGGACCTAACCGCTGGAACTCATGAAGAGGTTCCGAAGGCCGCAACAAAAAAGGAGGATGCCGATGTTAAAGCACAGGAAGATTCTGTGGCAGTTCCTAGTCCAGAGCAATCTGATGACAGTGACGATGACTTTCAAAAATGGTCTCAGTATAAATGTGGCTATTAG	3081	0.4158	MGLYGIWPAGPNSQPLSLGLDRDRATSRQLVTHSCGRIDRYNTKLLFLLFLVFSVGSNVAINQSAIFTNCFQISVWCLMDPFDDILPTAPAARTRLGAKFIPKAKSKQFPRKGIPASEHSTSSKDGISGNECQNAVASALSMPAEEPKGSVHHTQVEIPNSEDSTNRKQVSVKGDSAALVDDSTITATEVDADQKSMNFLKPICEVTEGDPVYFEGASVTSFVPETNLNNGTTQPVHPANAVENEFNVAAPSATCSAIDRMKEQPKIGEGSFLDSNKLIDNSIQVGTDLGFQGSSDDKIAIIQSNFDSKSNFGKKQEGVSAEFELDPFSNILPYPGAGNVHKFKPKIKPRPRVSNVPAIASDSSNVMMEKSVELPTSCTNDFQFFQSCGDGSGGLNQSASLPLPTSEILRTTELPDKFDDTSSSILSEDNKSLAAAIPSQLDSLNAMLSEDAVHNGTTDWPSSFGKSSREAADIFSGLESLDDFLTQAATGTGKPALHSFNGKGGEENFVTPAPSSINSFGECDTTQVQRCPEYHTPQDSLTFNEAAVFNEDDIHTSNRRLETEEIVDLNPACPGDDVIDYQSMKSGEDPTLGIPVHEELTNAADSPTLADFLHADVTREKEDSNKRKKDGSTSCSLRKNRRCIAGEEDKGAKTSRQLRKQAARKPANSSLNEDVEDNNDLDPSYNSNGDELQENDDEYEVDYPSRKRRVSNSSQKKPVAKSGKTSQKPKKANDDLEKTEEPPKKFSHSTRRRKRCVDKALLEIPEDELDRLNIPIKDIILLEEHRERLAKKEAMTSNTSSTNQSGGDSLHEAGSYNEGAYDDGAYDDGAYNDEEFLGSEDGRDPYDNQANEGITSTSVLLNYQSFREKKTPRGKWSKQETELFYEAVREMGTDFSVIQKTFFPDKTRHQIKLKYKKEERQQPLQLTDAVNNSAKDHPHSKLFIELLKLASTKAEEYPGRDASDLVMAEEVVDLTAGTHEEVPKAATKKEDADVKAQEDSVAVPSPEQSDDSDDDFQKWSQYKCGY*	1027

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso11g0094	1026	MobiDBLite	consensus disorder prediction	976	1026	-	-
	Gso11g0094	1026	MobiDBLite	consensus disorder prediction	794	811	-	-
	Gso11g0094	1026	MobiDBLite	consensus disorder prediction	727	747	-	-
	Gso11g0094	1026	PANTHER	TRANSCRIPTION FACTOR TFIIIB COMPONENT B'' HOMOLOG	342	1017	-	-
	Gso11g0094	1026	MobiDBLite	consensus disorder prediction	791	851	-	-
	Gso11g0094	1026	PANTHER	RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B	342	1017	-	-
	Gso11g0094	1026	MobiDBLite	consensus disorder prediction	154	172	-	-
	Gso11g0094	1026	MobiDBLite	consensus disorder prediction	115	129	-	-
	Gso11g0094	1026	Gene3D	-	876	941	-	-
	Gso11g0094	1026	MobiDBLite	consensus disorder prediction	109	129	-	-
	Gso11g0094	1026	SUPERFAMILY	Homeodomain-like	874	922	IPR009057	-
	Gso11g0094	1026	MobiDBLite	consensus disorder prediction	976	997	-	-
	Gso11g0094	1026	MobiDBLite	consensus disorder prediction	646	753	-	-
	Gso11g0094	1026	Pfam	Myb DNA-binding like	866	936	IPR039467	-
	Gso11g0094	1026	CDD	SANT	875	917	IPR001005	-
	Gso11g0094	1026	MobiDBLite	consensus disorder prediction	143	175	-	-
	Gso11g0094	1026	SMART	sant	872	921	IPR001005	-
	Gso11g0094	1026	ProSiteProfiles	Myb-like domain profile.	868	919	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso11g0094	Gso-Chr11	773906	782763	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Gso11g0094		Myb_DNA-bind_7	5.1e-22	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso11g0094	K15198		-	gmx:100809837	1912.5