Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0086 ATGGAGGGAGCATCGAGGAATGGTAGTGTTTGTGTGGCACCGTTTCTGAGCAAGACATACGACATGGTCGATGATCCTTCCACCGACTCGGTGGTGTCGTGGGGCAAAAACAACAACACCTTCGTTGTTTGGAACGTTCCCCAATTCACCACAGACATCTTGCCCAAACATTTTAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTGAATACTTATGGTTTCAGAAAGGTTGACCCAGATCGATGGGAATTTGCAAATGAAGGATTTTTAAGAGGTGAAAAACAACTTTTAAAAAGTATCAGTAGGCGGAAATCTGCTCATGTAAATGGTAGTCAACAACCATCTCAAGTGCATAAATCAGCTGTTAGAGCATGTGTTGAAGTGGGGAAATTTGGGTTTGAGGAAGAGGTGGAAAGACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTTGTTAGGTTGAGACAGAAACAGCAAGGGACTGATAACCAATTGAAAAATGTTGGGCAACGTGTGCAGTCAATGGAGCAGCGTCAGCAGCAAATGATGTCATTCCTGGCAAAGGCTATGCAGAGCCCATGCTTCATAGCTCAATTTGTTCAGCAGCAGAATGAAAGTAGTAAACATATCCCTGGGAGCAATAAAAAGAGGAGGCTCCAGCGACAAGAAGAAGATAGTTTAGCCACCAAGGATCTCCATAGTTCTCTTGAAGGACACACTGTCAAGTATCAGAGTTCCATAAATGAGGCTGCAAAAGCATTATTTCTCCAGATATTGCAAATAAACAATTCTACAACACAATCATCAATTAAGAGCCCTGATGTTTTCCTTATTGATGATGTTCCTTCTGCCATTGCATCAGATAGCAGTAGTTCATCCACTCAGGTTTCTAATGTGATGGTTCCACCTATATCTGAGCTGACATCTATGGAAGTAGGATCACAGTTTCCTCTCAATTGTATGCCCAGTAACATATCTGAGTTGCAGTCTTCGCCTGCTGTTTTGGGTTTCTGTAGAAATCAAGGGATGGAGACAGAAAGCAGTTTATTGAATCATGATCTGAATGTTATGGGGGCTGATACTAGGAACATGGGGGAGATAGATATGATGTCAACTGTTTTAGATGAGGCAGATGAAGCTAATCATTTTTCACCTGACACAGATGGAATTTCTAAACTCCCAGAAATCAGTGATGAATTCTGGGAACTTCTTTTAAGGCCAAGCCCACTTACAGAAGGCACAGAGGAAACTAAATGTAGCTCTCTAGGATGTGGTTTGACTGATGATCAGGGTTTGCCTTCAGAAATGGAAAATAAGCAGGAAAATTTTGATAAGATACTACATGTTGACCATCTTACTCAACAGATGGGACTACATGCATTGGATTACTAA 1395 0.4158 MEGASRNGSVCVAPFLSKTYDMVDDPSTDSVVSWGKNNNTFVVWNVPQFTTDILPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGEKQLLKSISRRKSAHVNGSQQPSQVHKSAVRACVEVGKFGFEEEVERLKRDKNVLMQELVRLRQKQQGTDNQLKNVGQRVQSMEQRQQQMMSFLAKAMQSPCFIAQFVQQQNESSKHIPGSNKKRRLQRQEEDSLATKDLHSSLEGHTVKYQSSINEAAKALFLQILQINNSTTQSSIKSPDVFLIDDVPSAIASDSSSSSTQVSNVMVPPISELTSMEVGSQFPLNCMPSNISELQSSPAVLGFCRNQGMETESSLLNHDLNVMGADTRNMGEIDMMSTVLDEADEANHFSPDTDGISKLPEISDEFWELLLRPSPLTEGTEETKCSSLGCGLTDDQGLPSEMENKQENFDKILHVDHLTQQMGLHALDY* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0086 464 Coils Coil 131 158 - -
Gso11g0086 464 Gene3D - 9 105 IPR036388 -
Gso11g0086 464 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 9 435 - -
Gso11g0086 464 SUPERFAMILY "Winged helix" DNA-binding domain 12 104 IPR036390 -
Gso11g0086 464 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0086 464 MobiDBLite consensus disorder prediction 211 234 - -
Gso11g0086 464 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0086 464 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 435 IPR027725 -
Gso11g0086 464 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0086 464 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0086 464 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g0086 464 MobiDBLite consensus disorder prediction 206 234 - -
Gso11g0086 464 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0086 Gso-Chr11 702196 705722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0086 12 459 HSF AT5G16820 49.891 3.06e-131 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso11g0086 HSF_DNA-bind 1.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0086 K09419 - gmx:100808756 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1991 1 56435066 56438741 Gso11g0086 11 702196 705722 GST
Gso11g0086 11 702196 705722 Gso20g1203 20 41984841 41987410 PCT
Gso11g0086 11 702196 705722 Gso10g2178 10 48817618 48820075 PCT
Gso20g1203 20 41984841 41987410 Gso11g0086 11 702196 705722 PCT
Gso10g2178 10 48817618 48820075 Gso11g0086 11 702196 705722 PCT