Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0060 ATGGATTCGGAAGGCGAGTGTGTTAGAACACCAAAGATGGAAGCAGAAGGGGCTCTGAATTCAAAGATGAAGGGTGCTGGAAACGTGAGCAGTAAGGATATGATATTCAGAGCTGATAAGATTGATCTCAAGAGTTTGGATGCACAGCTGGAAAAGCACTTGAGCAGGGTTTGGTCGAGGAGCATTGAGACTAATCGCCCCAAAGAAGAGTGGGAGGTTGATTTGGCCAAATTGGATCTGCGATATGTTGTGGCTCATGGGGCGTATGGTACTGTATACAGGGGCACATATGATACCCAAGACGTTGCAGTGAAAGTGTTGGACTGGGGTGAGGATGGTGTAGCTACTGCTGCTGAAACTGCTGCTTTACGGGCATCTTTTAGGCAGGAAGTTGCTGTCTGGCAAAAACTTGACCATCCAAATGTGACAAAATTTGTTGGAGCTTCGATGGGTACTTCAAATCTTAAGATTCCGCCAAAAAACCCTTTGAATGCCGACGAAGAGTCCCTTCCCTCTAGGGCATGCTGTGTTATTGTTGAGTTTGTCTCTGGTGGGACACTAAAGCAATATTTGTTTAAAAGTAGGAGGAGGAAACTTGCTTATAAGATTGTGATTCAGCTGGCTTTGGACCTTGCTAGGGGTCTTAATTATCTACATTCAAAGAAGATTGTTCATCGAGACGTTAAAACAGAGAATATGTTACTAAGTACTAGTCGGAATCTAAAAATAGCTGATTTTGGAGTTGCTCGGGTTGAAGCTATGAATCCAAGTGATATGACTGGTGAAACTGGAACCCTAGGATATATGGCCCCAGAGGTTCTGGATGGGAAACCTTACAACAGGAGATGTGATGTCTATAGCTTTGGCATTTGCTTGTGGGAAATTTATTGCTGTGATATGCCTTATCCAGATCTAAGCTTTGCTGATGTGTCATCTGCAGTTGTTCGCCAGAATTTACGACCAGACATTCCAAGATGTTGTCCAAGCGCCTTAGCAAATATCATGCGGAAATGCTGGGATGCGAATCCAAACAAGCGTCCAGAAATGGAAGAGGTGGTGAGGATGCTTGAAGCACTTGATACTAGCAAAGGTGGTGGTATGATACCTGAAGATCAGAGTTCAGGTTGCTTTTGTTTTGCCCCAACCCGAGGTCCCTAA 1158 0.4439 MDSEGECVRTPKMEAEGALNSKMKGAGNVSSKDMIFRADKIDLKSLDAQLEKHLSRVWSRSIETNRPKEEWEVDLAKLDLRYVVAHGAYGTVYRGTYDTQDVAVKVLDWGEDGVATAAETAALRASFRQEVAVWQKLDHPNVTKFVGASMGTSNLKIPPKNPLNADEESLPSRACCVIVEFVSGGTLKQYLFKSRRRKLAYKIVIQLALDLARGLNYLHSKKIVHRDVKTENMLLSTSRNLKIADFGVARVEAMNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPDIPRCCPSALANIMRKCWDANPNKRPEMEEVVRMLEALDTSKGGGMIPEDQSSGCFCFAPTRGP* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0060 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Gso11g0060 385 Gene3D Phosphorylase Kinase; domain 1 67 158 - -
Gso11g0060 385 PRINTS Tyrosine kinase catalytic domain signature 179 192 IPR001245 GO:0004672|GO:0006468
Gso11g0060 385 PRINTS Tyrosine kinase catalytic domain signature 217 235 IPR001245 GO:0004672|GO:0006468
Gso11g0060 385 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672|GO:0006468
Gso11g0060 385 PRINTS Tyrosine kinase catalytic domain signature 327 349 IPR001245 GO:0004672|GO:0006468
Gso11g0060 385 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 12 379 - -
Gso11g0060 385 Pfam Protein tyrosine and serine/threonine kinase 81 356 IPR001245 GO:0004672|GO:0006468
Gso11g0060 385 SUPERFAMILY Protein kinase-like (PK-like) 58 356 IPR011009 -
Gso11g0060 385 Gene3D Transferase(Phosphotransferase) domain 1 184 369 - -
Gso11g0060 385 CDD STKc_MAP3K-like 84 356 - -
Gso11g0060 385 SMART serkin_6 78 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0060 385 ProSiteProfiles Protein kinase domain profile. 78 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0060 385 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 12 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0060 Gso-Chr11 512345 515965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0060 20 385 MAP Kinase Kinase Kinase AT3G22750 79.891 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso11g0060 PK_Tyr_Ser-Thr 6.7e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0060 - - gmx:100820513 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2018 1 56638282 56642262 Gso11g0060 11 512345 515965 GST
Gso20g1191 20 41804259 41809261 Gso11g0060 11 512345 515965 PCT