Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0048 ATGGAATCGGGGGTGAGATCGGGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAACTCCTCGGGTTGTTTAATTGTGCGAAAGAAGGGGGATGTGTTGGGTGCTACTGCTTCCACCTCTCGGAAGCTCTATGAATCCAAGAATAGGCCAAACATCAACGTGCCATTGAGTGATTCTGGATCAAGCGACGAGTCACCAGTGCCTCCTGGTAGAAGGCTTGGTCCCGAGACTATTCGAGTTTTCAATGGTTTCGCTGCTGCCTCTGAGCGGGGTGGGAGTGAAATTAGTCGAAAGAGGTATAGAGTACAACGAATTAGGGGTAATGGTGAGGGTATTGCTGCGGAGAAAGGGTTGGAGCAGTGGGAAAGAAAGCGTAGTAAGTTGGTTGTGTACGATTTCGATGATTACAATGGCATGGATGTGGAGAACATGAGGAGGAGGCATTTGGATGGTCATGGAGGAGGAAGGTTTATGGGTTCAGTGCATGCTGCTAGAATTGGCATTGATAGGGAATTCAAAACAGGTTCAAGTGGACGAATCCTTGATAAGAGAAATAACTCTTATGGTGATAGGCCTGGTGGCTTGTATCCAGGGGATAATGTTGATCACAGTAGGTACAAGATAAACAGGGATGGACTCCGGGTACCTCTACGCTTGCAGAGGGAGAAGTTTAATTCAGATGAGTCCATTAGGGTTCAGGGGAGAAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGGGTGGGCCATCAGAACAGTATTATGATCATCACAAACCAGTGGAAAGAAGGCAAAGGTTGAAGACTGAAGAGACTGCTAAGAGGCTGATGACTGAAGAGACTGCTAAGAGGTTGAAGACCGAAGAGGCTGCCAAAAGGAATGTAAATGTTCCAATTCGTCCTTTGTCATACTTGGAAATGAAACCTGTTGAGAAAACAGGATTACTCAAGAGGCCAGAGAAGAAAAGGATAGCATCAAGAAAATCATTGTCAAGCAAGGACAGTAAGGGTGATGAGGGGGATTCAGATAACAGTGACACATCATTGAATCTGGGAATAAGAAATACTGAAGCACGGAAGCCAGCAAAAAAAATAATATCTGAGGATGAGCAGACTCCTGTGCATGAAAAACTCCCAACCACAAGAACAAAAGAAGGAAAAATCAAGCGTGGTAGTGGTACAGAAAAACAGAAACTGCGTGAACGAATAAGGGAGATGCTGCTGGATTCTGGTTGGACCATAGACTATCGACCCCGAAGGAACAGGGACTATTTGGATGCAGTTTACATTAATCCAGCAGGTACAGCGTATTGGTCTATCATCAAGGCCTATGAAGCACTTCAAAAGCAATTGAATGAAGATGCTAATGAGGCCAAGCCCAAAGGGGATAGTTCTTCTTTTGCTCCTATTGCAGATGAAGTGCTCAATCAGCTAACTAGGAAAACTAGGAAGAAAATGGAGAAAGAATTGAAAAAGAAGAAAAAATATGATAGTGAAAGCGATAATGAAAAAGAGCCTCAAATAAGATCTGCCAGCCACAAGCGTGATATGAATAGTACGGATGGTGATAACAATGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGTAGTAAGTCAATGAAAAATAAAATGTTTGAAAATACCATTATCAGTGCTCCCTCTAAAATCCAGAATGCTACCAATCACTCAGGTGATGGAATAGAAAAATCATTATTTGGATGTGATCCTCAGATACACGGACGGAAGAGTAAAAAACATGGAAGATGTACCTTGTTAGTTCGCAGTTCTAACAAAGGATCAAATTCAGAATCTGATGGCTTTGTTCCATATACGGGCAAGCGGACAGTTCTTGCCTGGTTAATTGACTCTGGAACAGTAGAGTTAAGCCAAAAGGTTCAGTACCGCAGACGGAAGAAAGTCATGCTGGAGGGGTGGATCACAAGAGACGGCATTCACTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCATGCCGGAAGCAAATTGCCGCAGCCGTATCAAAATATATATTTGGAATCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGAATAGACAAGAGCATGCTGAAAAAATTGGTTTCCATTCAGTGGATATTGATGGCGGTGATCCTAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGCTGTCCATCAACATTTCATCAGAGCTGTTTGGATATACAGATGCTTCCTCCGGGTGAATGGCGTTGTATGAATTGCACCTGTAAATTTTGTGGCATAGCCAGTGGAACTTCTGAAAAAGATGATGCATCTGTGTGTGTCCTACACATTTGCAACTTATGTGAGAAAAAATATCATGACTCTTGCACTAAGGAGATGGATACCCTTCCTAATAACATCAATTCATCAAGCCTTTCTTTTTGTGGGAAAGAGTGCAAAGAGCTTTCTGAACACTTGAAGAAATACCTTGGTACCAAGCATGAGCTGGAATCGGGTTTTTCATGGTCTCTCATTCATAGGACAGATGACGACTCAGAGGCAGCTTGCAGGGGTATTAGCCAGAGGGTAGAATGCAATTCCAAGTTGGCTATTACACTGACTGTGATGGATGAATGCTTTTTACCTGTTATTGATCGGAGGAGTGGGATCAATTTAATCCGTAACGTTTTATATAATAGTGGATCAAACTTTAGTCGGTTGAGCTATAGTGGCTTTTACACTGCTATTTTGGAGAGAGGGGATGAAATCATTGCTGCAGCATCTATCAGGTTCCATGGAACTCAGATAGCAGAGATGCCATTCATTGGAACTCGCCATATATATAGGCGCCAGGGGATGTGCCGCCGGCTTTTTTCCGCCATTGAATCGACCCTTTGCTCTCTGAAGGTTGAAAAACTAGTTATTCCTGCCATTGCTGAAGTCACAAATACATGGACGACAGTTTTTGGCTTCACACATCTGGACAAATCACTCAGGCAAGAAATGAAGTCACTGAATATGATGGTCTTCCCTGGTATAGATATGTTACAGAAGCTGTTAGTGGAACAAGGAAACCATGAGGGTAATAAAACCACAGGTTCTGAGAAAATGGAAAATGAAGACGATGATTTTATCAAGACCAAAATGGAAAGTAGGTCAGATGTGGGTTCTTCAACTCCACAAGATCCTCATGGTAGTGATGATGTTAGTTCAAGTCCTGCTAATGAGACAAATAATGAATGCAGCGATGCTTCTCAAGAACTAAATAACCAAGTTTTGGTTGATGGGATTATCTGTTCCAAATCTCATTCTGAGGAAATGATGTCTGATCCAGTTTCAGATAAATGTATTTCTCCTTCTAGAACTAGTCTTAGTGAACTAGAAATGAAGAATAAAGTAGCGGCTGCTCCTCCTGTTGATAGATTAGATTCTTCTACCAAATGTCAATCCATTTCTCCGGTTGACACTTCTGTTAGTTGTCACCCAGTAGATATTCTGAAAGTTCAAACTTTGGTTCAGGAAAATACTTGTTGTGATCCATGTCCAGCAGAAGAAAACCTTGACAAGAAGTGTCACTCGTCCACTGCTATGAATTTTGATTCATTGGAGCTTGACATTAATCCAGTGTTGGATTCTGAAATGGCAGACAATACTCTTCCTACTAAAGAGGTTTTTATGAATGACGCTGTTGAAGTTGTTCCTTCAGGGAATATATCTGAAGAGAATATTACAAAGGGGAATAATCGAAATGTAGATGAATCCAGTTCTGCTCTCAATCATGCTGATGAAAGTTTGTTGCAAGTGGGATCTGTTTCCAATGGTGAAATTGGATGTGAGAATGAAAAGGATTTACATTTGAACCCAGGAGTTACTTCAAATGAAATGTATTTTGATGAAAGTGGCATAAATGCTTCTGGTGATAGTTCCGAGAATGTTCTGGTCTAA 3948 0.4172 MESGVRSGGSGVVVKSRNSSGCLIVRKKGDVLGATASTSRKLYESKNRPNINVPLSDSGSSDESPVPPGRRLGPETIRVFNGFAAASERGGSEISRKRYRVQRIRGNGEGIAAEKGLEQWERKRSKLVVYDFDDYNGMDVENMRRRHLDGHGGGRFMGSVHAARIGIDREFKTGSSGRILDKRNNSYGDRPGGLYPGDNVDHSRYKINRDGLRVPLRLQREKFNSDESIRVQGRNGVLKVMVNKKKVGGPSEQYYDHHKPVERRQRLKTEETAKRLMTEETAKRLKTEEAAKRNVNVPIRPLSYLEMKPVEKTGLLKRPEKKRIASRKSLSSKDSKGDEGDSDNSDTSLNLGIRNTEARKPAKKIISEDEQTPVHEKLPTTRTKEGKIKRGSGTEKQKLRERIREMLLDSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYEALQKQLNEDANEAKPKGDSSSFAPIADEVLNQLTRKTRKKMEKELKKKKKYDSESDNEKEPQIRSASHKRDMNSTDGDNNEEKLSSFIKQGSKSMKNKMFENTIISAPSKIQNATNHSGDGIEKSLFGCDPQIHGRKSKKHGRCTLLVRSSNKGSNSESDGFVPYTGKRTVLAWLIDSGTVELSQKVQYRRRKKVMLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQIDAWNRQEHAEKIGFHSVDIDGGDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWRCMNCTCKFCGIASGTSEKDDASVCVLHICNLCEKKYHDSCTKEMDTLPNNINSSSLSFCGKECKELSEHLKKYLGTKHELESGFSWSLIHRTDDDSEAACRGISQRVECNSKLAITLTVMDECFLPVIDRRSGINLIRNVLYNSGSNFSRLSYSGFYTAILERGDEIIAAASIRFHGTQIAEMPFIGTRHIYRRQGMCRRLFSAIESTLCSLKVEKLVIPAIAEVTNTWTTVFGFTHLDKSLRQEMKSLNMMVFPGIDMLQKLLVEQGNHEGNKTTGSEKMENEDDDFIKTKMESRSDVGSSTPQDPHGSDDVSSSPANETNNECSDASQELNNQVLVDGIICSKSHSEEMMSDPVSDKCISPSRTSLSELEMKNKVAAAPPVDRLDSSTKCQSISPVDTSVSCHPVDILKVQTLVQENTCCDPCPAEENLDKKCHSSTAMNFDSLELDINPVLDSEMADNTLPTKEVFMNDAVEVVPSGNISEENITKGNNRNVDESSSALNHADESLLQVGSVSNGEIGCENEKDLHLNPGVTSNEMYFDESGINASGDSSENVLV* 1316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0048 1315 CDD NAT_SF 917 976 - -
Gso11g0048 1315 Pfam PHD-finger 722 764 IPR019787 -
Gso11g0048 1315 ProSiteProfiles Zinc finger PHD-type profile. 719 764 IPR019787 -
Gso11g0048 1315 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 908 978 IPR016181 -
Gso11g0048 1315 MobiDBLite consensus disorder prediction 176 200 - -
Gso11g0048 1315 MobiDBLite consensus disorder prediction 41 63 - -
Gso11g0048 1315 MobiDBLite consensus disorder prediction 357 397 - -
Gso11g0048 1315 MobiDBLite consensus disorder prediction 491 523 - -
Gso11g0048 1315 MobiDBLite consensus disorder prediction 1052 1084 - -
Gso11g0048 1315 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1212 - -
Gso11g0048 1315 MobiDBLite consensus disorder prediction 315 343 - -
Gso11g0048 1315 MobiDBLite consensus disorder prediction 478 527 - -
Gso11g0048 1315 MobiDBLite consensus disorder prediction 1051 1084 - -
Gso11g0048 1315 SUPERFAMILY FYVE/PHD zinc finger 712 767 IPR011011 -
Gso11g0048 1315 MobiDBLite consensus disorder prediction 41 72 - -
Gso11g0048 1315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 712 805 IPR013083 -
Gso11g0048 1315 ProSitePatterns Zinc finger PHD-type signature. 722 761 IPR019786 -
Gso11g0048 1315 SMART PHD_3 721 762 IPR001965 -
Gso11g0048 1315 MobiDBLite consensus disorder prediction 315 397 - -
Gso11g0048 1315 Pfam Tify domain binding domain 644 694 IPR032308 -
Gso11g0048 1315 PANTHER PHD FINGER FAMILY PROTEIN 1 1212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0048 Gso-Chr11 418599 426534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0048 4 1022 PHD Transcription Factor Family AT4G14920 49.136 0.0 891
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso11g0048 TDBD 7.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0048 - - gmx:100801863 2553.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2034 1 56749911 56757614 Gso11g0048 11 418599 426534 GST