Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0047 ATGGAATCGGGGGTGGGATCGGGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAACTCCTCGGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGGTTGGGTGCTACTGCTTCCACCTCTCGGAAGCTCTATGAATCCAAGAAAAGGCCAAACATCAACGTGCCTGTGTCCTCGAGTGATTCTGGTTCAAGCGACGAGTTGCTGATGCCTCCTGGTAGAAGGCTTGGTCCCGAGACTATTCGAGTTTGCAATGGTTTGGTTGCCTCTGAGCGGGTTGGGAGTGAAATTAGTCGGAAGAGGGATAGAGTGGGACGAATTAGCGGTAGTGGGGAGGGCATTGGTGCGGAGAAAGGTTTGGAGCAGTGGGAAAGGAAGCGTAGTAAGTTGGATGTATACGATTTCGATGAATACGATGGCATGGATGTGGAGAACATGAGGAGGAGGCATTTGGATGGTCCTGGGGGAGGAAGGTTTATGGGATCAGTGCATGCTGCTACAAGTGGCATTGATAGGGATTTCAGAACAGGGTCAAGTGGACGTGTTCTTGATAAGAGAAAGAACTCCTATGCTGACAGGCCTAGTTGCTTCTATCCGGAAGATTATGTGTGTAACAGTAGGTTCAAGATGAACAATGATGGAGCTCAGGTACCTCCACCCTCGCAGAGGGAGAAGTTTAATTCAGACGAGTCCATTAGGGTTCAGGGGAAGAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGGGTGGTACATCAGAACAGTATTATGATCATCACAAACCCTTGGAAAGCAGGCAAAGGTTGAAGACCGAAGAAACTGCCAAGAGGTTGAAGACCGAAGAGACTGCCAAGAGGTTGAAGACTGAGGGGACTGCCAAGAGGAATATTCCAATTCTTAAAAAAAATGAAAAGAAACCTGTTGATAAACCAGCATTACTTAAGAGGCCAGAGAAGAAAAGGACAGCATCAAGAAAATCGTTGTCAAGCAAGGACAGTAAGGGTGATGAGGGGGATTCAGATAACAGTGACACATCATTGAATCCAAGAATAAGAAATACTGAAGCTCGTAAGTCTGTGAAAAAAATAATCTCTGAGGATGAGCAGACTCCTGTGCGCGAAAAAACCCCAACCACAAGAACGAAAGAAGGAAAAATCAAGCGTGGTAGTGGTACAGAAAAACAGAAACTGCGGGAACAAATAAGAGAGATGCTGCTGAATTCAGGTTGGACGATAGACTATCGACCTCGAAGGAACAGAGACTACCTGGATGCAGTTTACATTAATCCAGCAGGTACAGCCTATTGGTCTATCATCAAGGCCTATGATGCTCTTCAAAAGCAATCAAATGATGATGCTGATGAGGTCAAGCCCAAAGGGGATAGTTCTTCTTTTGCTCCTATTGCTGATGAGGTTCTCAGTCAGCTAACAAGGAAAACTAGGAAGAAAATGGAGAAAGAATTGAAAAAGAAGAAGAAAAGGCATGATAGTGAAAGTGATAATGAGAAAGAGCCTCAAATAAGAAGATCTGCCAGCCACAAGCGTGATATGAATAGCATGGATAGTGATAGCAACGAGGAGAAATTAAGCTCCTTTATAAAACAGGGAAATAGGTCAATGAAAAACAAAATGTTTGAAAATACCTCTATCAGTGCTCGCTCTAAAATCCAGAATGCTACCCATCAATCAAGTGATGGAATAGAAAAACCATTATTTGGATGTGATCCTCATATACACGGACGGAAGAGTAAAAAACATGGAAGATGTACCTTGTTAGTTCGCAGTTCTAACAAAGGATCAAATTCAGAATCTGATGGCTTTGTTCCATATATGGGCAAGCGGACAGTTCTTGCCTGGTTAATTGACTCTGGAACAGTAGAGTTAAGCCAAAAGGTTCAGTACCGCAGACGGAAGAAAGTCATGCTGGAGGGGTGGATCACAAGAGACGGCATTCACTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCATGCCGGTAGCAAATTGCCTCAGCCATATCAAAATATATATTTGGAATCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGAATAGACAAGAGCATGCTGAAAAAATTGGTTTCCATTCAGTGGATATTGATGGAAATGATCCTAATGATGATACTTGTGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGCTGTCCATCAACATTTCATCAGAGCTGCTTGGATATCCAGATGCTTCCTCCTGGTGAATGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGCATAGCCAGTGAAACTTCTGATAAAGATGATGCATCTGTGAATGTCCTACGCACTTGCATCTTATGCGAGAAAAAATATCATGACTCTTGCACTAAGGAGATGGATACCCTTCCTAATAATATCAATTCATCAAGCCTTTCTTTCTGTGGGAAAGAGTGCAAAGAGCTTTCTGAATACTTGAAGAAATACCTTGGTACCAAGCATGAACTAGAAGCGGGGTTTTCATGGTGTCTCATTCATAGATCAGATGAAGACTCAGAGGCAGCTTGCAGGGGACTTACCCAGAGGGTAGAATGCAATTCCAAGTTGGCTATTGCACTGACTGTAATGGATGAATGCTTTTTACCTGTTATTGATCGGAGGAGTGGGATCAATTTAATCCGCAACATTTTATATAATAGTGGATCAAACTTTAGTCGGTTGAGCTATAGTGGCTTTTACACTGCTATTTTGGAGAGAGGGGATGAAATCATTGCTGCAGCATCTATCAGGTTCCATGGAACTAAGATAGCAGAAATGCCATTCATTGGAACACGCCATATATATAGGCGCCAGGGGATGTGCCGCCGACTTTTTTCTGCCATTGAATTGGCCCTTTGCTCTTTGAAGGTTGAAAAACTAGTTATTCCTGCAGTTGCTGAACTCACACATACATGGACAACAGTTTTTGGCTTCACATATCTAGATGAATCACTCAGGCAAGAAATGAAGTCACTGAATATGATGGTCTTCCCCGGTATAGATATGTTACAGAAGCTGTTGGTGGAACAAGGAAACCATGAAGGTTCTGAGAAAATGGAAAATGGAGACAACGATTTTATCAAGACCAAAATGGGAAATAAGTCAGATATGGGTTCTTCAACTCCACAAGATTCTCATGGTAGTGATGATGTTAGTTCAAATCCTGCTAATGAGACGAATGATGAATGCAGCGATGCTTCTCAGGAACTAAATAACCAAGTTTTGGTTGATGGGATTATCTGTTCCAAATCTCATTCTGAGGAAATGATGTCTGATCCAATTTCAGATAAATGTGATTCTCCTTCTAGAACTAGTAACAGTGAACTAGAAATGAAGAATAAAGTAGCGGCTGCTCCTCCTGTTGATAGATTAGATTCTTCTACCAAATGTCAATCCATTTCTCCAATTGACACTTCTGTTAGTAGTCACCCAGTAGATATTTTGAAAGTTCAAGCTTTGGTTCAGGAAACTACTTATTCTGATCCATGTTCAGAAGAAGAAAACCTTGACAAGAAGTGTCACTCATCCACTGCTATGAATTGTGATTCGTCAGAGCTTGACATCAATCCAGTGTTGAATTCTCAAATGGCAGACAATACTCTGCCTACTAAAGAGGTTTGTATGAATGACACTCTTGAAGTTGTTCCTTCAGGGAATATATCTGAAGATAATATTACAAAGAGAAATAATCGAAATGTAGATGAATCCAGTTCTGCTCTCAATCATGCTGATGAGAGTTTGTTTCAAGTATGA 3792 0.419 MESGVGSGGSGVVVKSRNSSGCLIVRKKGDGLGATASTSRKLYESKKRPNINVPVSSSDSGSSDELLMPPGRRLGPETIRVCNGLVASERVGSEISRKRDRVGRISGSGEGIGAEKGLEQWERKRSKLDVYDFDEYDGMDVENMRRRHLDGPGGGRFMGSVHAATSGIDRDFRTGSSGRVLDKRKNSYADRPSCFYPEDYVCNSRFKMNNDGAQVPPPSQREKFNSDESIRVQGKNGVLKVMVNKKKVGGTSEQYYDHHKPLESRQRLKTEETAKRLKTEETAKRLKTEGTAKRNIPILKKNEKKPVDKPALLKRPEKKRTASRKSLSSKDSKGDEGDSDNSDTSLNPRIRNTEARKSVKKIISEDEQTPVREKTPTTRTKEGKIKRGSGTEKQKLREQIREMLLNSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQSNDDADEVKPKGDSSSFAPIADEVLSQLTRKTRKKMEKELKKKKKRHDSESDNEKEPQIRRSASHKRDMNSMDSDSNEEKLSSFIKQGNRSMKNKMFENTSISARSKIQNATHQSSDGIEKPLFGCDPHIHGRKSKKHGRCTLLVRSSNKGSNSESDGFVPYMGKRTVLAWLIDSGTVELSQKVQYRRRKKVMLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQIDAWNRQEHAEKIGFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGIASETSDKDDASVNVLRTCILCEKKYHDSCTKEMDTLPNNINSSSLSFCGKECKELSEYLKKYLGTKHELEAGFSWCLIHRSDEDSEAACRGLTQRVECNSKLAIALTVMDECFLPVIDRRSGINLIRNILYNSGSNFSRLSYSGFYTAILERGDEIIAAASIRFHGTKIAEMPFIGTRHIYRRQGMCRRLFSAIELALCSLKVEKLVIPAVAELTHTWTTVFGFTYLDESLRQEMKSLNMMVFPGIDMLQKLLVEQGNHEGSEKMENGDNDFIKTKMGNKSDMGSSTPQDSHGSDDVSSNPANETNDECSDASQELNNQVLVDGIICSKSHSEEMMSDPISDKCDSPSRTSNSELEMKNKVAAAPPVDRLDSSTKCQSISPIDTSVSSHPVDILKVQALVQETTYSDPCSEEENLDKKCHSSTAMNCDSSELDINPVLNSQMADNTLPTKEVCMNDTLEVVPSGNISEDNITKRNNRNVDESSSALNHADESLFQV* 1264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0047 1263 MobiDBLite consensus disorder prediction 251 342 - -
Gso11g0047 1263 MobiDBLite consensus disorder prediction 523 540 - -
Gso11g0047 1263 MobiDBLite consensus disorder prediction 1046 1079 - -
Gso11g0047 1263 MobiDBLite consensus disorder prediction 353 393 - -
Gso11g0047 1263 MobiDBLite consensus disorder prediction 248 393 - -
Gso11g0047 1263 MobiDBLite consensus disorder prediction 1231 1263 - -
Gso11g0047 1263 CDD PHD2_CHD_II 721 760 - -
Gso11g0047 1263 MobiDBLite consensus disorder prediction 32 74 - -
Gso11g0047 1263 Pfam Tify domain binding domain 643 693 IPR032308 -
Gso11g0047 1263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 710 815 IPR013083 -
Gso11g0047 1263 Coils Coil 473 500 - -
Gso11g0047 1263 Pfam PHD-finger 721 763 IPR019787 -
Gso11g0047 1263 ProSitePatterns Zinc finger PHD-type signature. 721 760 IPR019786 -
Gso11g0047 1263 SUPERFAMILY FYVE/PHD zinc finger 706 762 IPR011011 -
Gso11g0047 1263 MobiDBLite consensus disorder prediction 50 64 - -
Gso11g0047 1263 MobiDBLite consensus disorder prediction 449 540 - -
Gso11g0047 1263 SMART PHD_3 762 820 IPR001965 -
Gso11g0047 1263 SMART PHD_3 720 761 IPR001965 -
Gso11g0047 1263 ProSiteProfiles Zinc finger PHD-type profile. 718 763 IPR019787 -
Gso11g0047 1263 PANTHER PHD FINGER FAMILY PROTEIN 7 1222 - -
Gso11g0047 1263 CDD NAT_SF 916 975 - -
Gso11g0047 1263 MobiDBLite consensus disorder prediction 1028 1043 - -
Gso11g0047 1263 MobiDBLite consensus disorder prediction 1028 1079 - -
Gso11g0047 1263 MobiDBLite consensus disorder prediction 1099 1122 - -
Gso11g0047 1263 MobiDBLite consensus disorder prediction 490 522 - -
Gso11g0047 1263 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 7 1222 - -
Gso11g0047 1263 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 907 977 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0047 Gso-Chr11 409652 417754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0047 11 1042 PHD Transcription Factor Family AT4G14920 48.780 0.0 886
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso11g0047 TDBD 6.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0047 - - gmx:100801320 2451.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2035 1 56758916 56766564 Gso11g0047 11 409652 417754 GST