Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0039 ATGGAGCTTCAGAGGCGTCCAGATCAGTGCCTCCCGGAGAGGAAAGGGCAGAAGAGGAAGCTCGAGGAGGAATTCGATGACGACCCACAGATCTCCCCTCCTCCCACCGGCGACGCTCGCGACGCCCTCCTCTCCGACGTTAAGGAACAGGTTTCCCTCCTCGATTCCACTTTCTCCTGGAACGAACCCGATCGTGCCGCCGCCAAGCGCGCCACGCACGCCCTCGCCGATCTCGCCAAAAACGAGGAAGTCGTTAACGTGATTGTTGAAGGAGGCGCCATTCCGGCGTTGGTTAAGCATCTTCAAGTGCCTCCTCTGCCTCTGCCCGAAACCGACCGTGTGCCAAGACCAATGCCGTTTGAGCACGAGGTCGAGAAAGGGAGTGCTTTCGCGCTTGGACTTCTCGCTGTCAAGCCAGAGCATCAACAACTCATTGTTGACAGTGGTGCCTTAAAACATCTTGTTGATCTTTTGAAGAGGCATAAGAATGGCTTAACATCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCCATCACTAATCTTGCTCACGAGAACAGCAGCATTAAGACTCGTGTCAGGAAGGAAGGCGGGATTCCACCGCTTGTTCATTTGCTTGAATTTGCGGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACCCTTGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCCCTTCCAACTCTGATTCTAATGCTTTGCTCAGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTCATTGGAAATCTGGTCCACTCTTCCCCTGATATAAAGAAAGAAGTTCTTCTTGCTGGAGCCTTGCAACCTGTTATTGGACTACTTAGCTCCTGTTGCTCTGAAAGCCAGAGGGAAGCAGCATTGTTACTTGGACAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTTCAGAGAGGTGCTGTCCGACCTCTGATAGAGATGCTTCAGTCCTCTGATGTTCAGCTAAAAGAAATGTCTGCCTTTGCATTGGGGAGATTAGCCCAGGACACACATAACCAAGCTGGTATTGCACACAATGGTGGCTTGATGCCATTACTGAAGCTTCTTGACTCCAAAAATGGCTCTTTGCAACATAATGCTGCATTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTAGGGTAGGTGGAATTCAGAGACTGCAGGATGGAGAGTTTATTGTTCAGGCAACTAAAGATTGTGTTGCAAAGACATTGAAAAGATTAGAAGAGAAGATTCATGGCCGAGTGCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAAAAGGCTTTTCAAAGACGAGTTGCTTTAACTCTTGCTCACCTTTGTTCTGCAGATGATCAAAGAAAAATATTTATTGATTATAATGGTTTGGAGTTGCTTATGGGGCTTCTTGGCTCTTATAACCCCAAGCAACAGCTTGATGGAGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCTATGACTCTGTCTCCTGTAGATGCCGCACCCCCATCTCCAACACCCCAGGTCTATTTGGGAGAGCAGTATGTAAACAATGTTACCTTGTCCGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCACAGAATCTGCCTCCTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGAGAAGGAGGCACGAGACATAGAGATTCCAAACATTAGATGGGAGGTTTTTGAGCCGATGATGAGATTTATATACACTGGATCAGTTGATATCACTCTTGATATTGCCCAAGATCTCCTCCGAGCAGCTGATCAATATCTTTTAGAAGGACTTAAGAGACTCTGTGAGTACACAATTGCACAGGATATATCACTGGAGAATGTGTCAAGTATGTATGAACTTTCAGAGGCCTTTAACGCTATATCATTGAGGCACACATGCATCCTTTTTATCTTGGAGCACTATGATAAATTGAGTGGAAAGCCAGGTCAAGCGGCAACGGAATCGAGGTTTCACGTACAAGAATTGCTATGGGTCCCTACCAACTTTTAG 2100 0.4595 MELQRRPDQCLPERKGQKRKLEEEFDDDPQISPPPTGDARDALLSDVKEQVSLLDSTFSWNEPDRAAAKRATHALADLAKNEEVVNVIVEGGAIPALVKHLQVPPLPLPETDRVPRPMPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRKEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLCSEDAAIHYEAVGVIGNLVHSSPDIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSSDVQLKEMSAFALGRLAQDTHNQAGIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGIQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKAFQRRVALTLAHLCSADDQRKIFIDYNGLELLMGLLGSYNPKQQLDGAVALCKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNVTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFEPMMRFIYTGSVDITLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFILEHYDKLSGKPGQAATESRFHVQELLWVPTNF* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0039 699 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 325 367 IPR000225 GO:0005515
Gso11g0039 699 SMART BTB_4 542 639 IPR000210 GO:0005515
Gso11g0039 699 Pfam BTB/POZ domain 536 637 IPR000210 GO:0005515
Gso11g0039 699 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 683 - -
Gso11g0039 699 ProSiteProfiles BTB domain profile. 542 609 IPR000210 GO:0005515
Gso11g0039 699 Gene3D Potassium Channel Kv1.1; Chain A 523 671 IPR011333 -
Gso11g0039 699 Pfam Armadillo/beta-catenin-like repeat 314 353 IPR000225 GO:0005515
Gso11g0039 699 Pfam Armadillo/beta-catenin-like repeat 230 269 IPR000225 GO:0005515
Gso11g0039 699 Pfam Armadillo/beta-catenin-like repeat 194 227 IPR000225 GO:0005515
Gso11g0039 699 SMART arm_5 81 137 IPR000225 GO:0005515
Gso11g0039 699 SMART arm_5 355 395 IPR000225 GO:0005515
Gso11g0039 699 SMART arm_5 314 354 IPR000225 GO:0005515
Gso11g0039 699 SMART arm_5 138 186 IPR000225 GO:0005515
Gso11g0039 699 SMART arm_5 272 312 IPR000225 GO:0005515
Gso11g0039 699 SMART arm_5 188 228 IPR000225 GO:0005515
Gso11g0039 699 SMART arm_5 470 510 IPR000225 GO:0005515
Gso11g0039 699 SMART arm_5 230 270 IPR000225 GO:0005515
Gso11g0039 699 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 199 234 IPR000225 GO:0005515
Gso11g0039 699 Gene3D - 270 417 IPR011989 -
Gso11g0039 699 Gene3D - 47 169 IPR011989 -
Gso11g0039 699 Gene3D - 420 517 IPR011989 -
Gso11g0039 699 Gene3D - 170 269 IPR011989 -
Gso11g0039 699 CDD BTB_POZ_ARIA_plant 529 644 - -
Gso11g0039 699 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 683 IPR044282 -
Gso11g0039 699 MobiDBLite consensus disorder prediction 1 41 - -
Gso11g0039 699 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 366 408 IPR000225 GO:0005515
Gso11g0039 699 SUPERFAMILY ARM repeat 440 511 IPR016024 -
Gso11g0039 699 MobiDBLite consensus disorder prediction 1 27 - -
Gso11g0039 699 SUPERFAMILY ARM repeat 61 412 IPR016024 -
Gso11g0039 699 SUPERFAMILY POZ domain 534 636 IPR011333 -
Gso11g0039 699 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 149 199 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0039 Gso-Chr11 325154 333531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0039 239 473 U-box Gene Family AT3G46510 26.337 4.08e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso11g0039 BTB 5.8e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0039 - - gmx:100819832 1327.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2042 1 56829408 56836593 Gso11g0039 11 325154 333531 GST
Gso11g0039 11 325154 333531 Gso20g1147 20 41249925 41258474 PCT
Gso11g0039 11 325154 333531 Gso10g2230 10 49395010 49404323 PCT
Gso20g1147 20 41249925 41258474 Gso11g0039 11 325154 333531 PCT
Gso10g2230 10 49395010 49404323 Gso11g0039 11 325154 333531 PCT