Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0038 ATGGAGCAAGCAGTGTCACTGATTGGTGCCCTGAACCTGGTTTCTCGCAACCTCCCTCTTCCCCCAGACCTCTTTGACACCGTTTCTTCTATCTATCACCGATCTAATCCTCTCTCTTCCGAGGCCGATGCACCGGAACAAGATTTGTTGGCCGACCTTCAAAATGCGCTGTTGGAGCAACGTCCTAACTACGCCTCTGCTTCCAAATTGAACAAAACAAGGGAAAGCCGTTATCACACTCAGATTCGACACCGCTTAACCCAACTCCAAGGATTGCCTTCAAGCAGAGGAGAGGACCTACAGACTATGTGCTTGCTTGAGCTTTATGGACTAAAGCTAGCTGAGTTGCAGAGGAAGGTGCAGACTGACGTGAATTCTGAATACTGGCTCAATGTTAAATGTGCATATCCAGACAGGCAATTATTTGATTGGAGCATGATGCGGTTGCGTCGTCCGCTGTATGGTGTTGGAGATCCATTTTCCATGGATGCCGATGATCAAATAAGGAAGAAACGGGATGCTGAGAGACTATCAAGATTGGAAGAACAGGCAAAAAATCATATGGAAACCAGAAAAAGAAGATTTTTTGCAGAAATACTGAATGCGGTCCGAGAGTTCCAATTACAAATTCAAGCTTTTTTGAAGCGAAGAAAACAGAGGAATGATGGTGTACAGGCATGGCATGGAAGGCAAAGGCAACGTGCAACACGGGCAGAGAAATTGAGATTCCAAGCCTTAAAGGCCGATGATCAGGAAGCTTACATGAGAATGGTAAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTGGGAGCAGCCGTTCAACGTCAAAAGGACTCAAAACAATCAGATGGCATTGAACCCTTGGAAGATTCAGAAACTGATTTACCTGAGTCAGATGGATTGAAGAATGGAATTTCTAAGGAATCACCTCTTGAGGAAGATGTGGATTTAATAGATTCTGATCGTAACGGTGGTGATACTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTAAGCGAGCAACCATCTATTCTTCAAGGTGGAGAATTAAGACCATACCAACTAGAAGGCCTCCAGTGGATGCTTTCTTTGTTTAATAACAATTTAAATGGAATATTGGCTGATGAAATGGGGCTTGGGAAGACAATACAAACCATCTCATTGATAGCATATCTTATGGAACACAAGGGTGTGACTGGTCCTCACTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAATGAATTCTCAACATGGGCTCCTAGCATCACAACCATTCTTTATGATGGACGGCTGGATGAGAGAAAAGCAATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATCCATTGGCTCTACTTGATTGTGGATGAAGGGCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTGGCTATCACATTCAACGAAGACTGCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAATTATGGTCCCTGCTCAATTTTCTCCTTCCAAACATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTGGATGTCTCTCTAACTGATGAAGAACAACTATTGATCATTCGGCGTCTGCATCAAGTGATAAGGCCCTTCATATTGAGAAGGAAAAAAGATGAGGTGGAAAAATTTCTTCCTAGTAAATCTCAGGTTATACTCAAATGTGACTTGTCAGCCTGGCAGAAAGTATATTATCAACAAGTCACTGATGTTGGCAGAGTTGGCTTAGACAATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGAAAATGTTGTAACCATCCCTACCTCTTTGTGGGTGACTATGATATCCATAAACACAAGGAGGAGATTTTCAGAGCATCAGGAAAGTTTGAACTTCTTGACCGTTTGCTTCCAAAACTTCGTAGAGCTGGTCACAGAGTCCTCCTTTTTTCTCAGATGACTCGGCTCATGGACATTCTTGAAATTTATCTGCGACTTAATGATTTTAAATTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGTTCCCTACTACGGAAATTCAATGCACCTGATTCTGCATACTTTATGTTTCTCTTGAGCACCCGTGCCGGAGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGCGATTGGAACCCACAAATGGATCAACAAGCCGAGGATCGAGCACATCGCATTGGACAAAAAAAGGAAGTTAGAGTTTTTGTGTTAGTTAGTGTGGGATCTATTGAAGAGGTGATTTTAGAGCGTGCTAAACAAAAGATGGGCATTGATGCCAAAGTCATTCAGGCAGGGCTCTTTAACACAACTTCTACAGCACAAGACAGAAGAGAAATGTTGCAGGAGATTATGCGTAGAGGTACTAGCTCACTTGGTACGGATGTCCCGAGTGAGAGAGAAATTAACCGCCTTGCGGCCCGATCTGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGCGAAGGCAAAAGGAGAATTACAGATCTCGTCTCATGGAAGAGCATGAACTGCCGGATTGGGTATACTCTCCACTAAATAAGGATGATAAGGTCAAAATATTTGACAGTGGTAGTGTTACTGGAAAGCGTAAAAGAAATGAAGTGGTATATGCAGATACATTAAGTGACCTACAATGGATGAAGGCTGTGGAGAACGGACAGGACATATCTAAGCTTTCAGTCAAAGGGAAAAGAAGAGACCACCTCCCTGTTGACAACCATGCACAAGCTAGTGATGACATGGGGACAGAAGAACGGTTATTTAGAAGTGAAGACACTTTCGACGTGACACCTGCCTCTAAGAGACTCAAGCCCGAAGAAATAAATTCCCAGAAACATGAAAACGAAGATGTCAGTGTTGGTGGTTTGAACGAGCATATATTTTCCTGGAATACTCGTAGAAAGAAGAGATCAGGCTACCTTGGCCAGGGTTCATTCTCTGATAGTAGAGGGCAGAATTCAAATGGAAGAGCAAACTGGAACTGA 3192 0.4226 MEQAVSLIGALNLVSRNLPLPPDLFDTVSSIYHRSNPLSSEADAPEQDLLADLQNALLEQRPNYASASKLNKTRESRYHTQIRHRLTQLQGLPSSRGEDLQTMCLLELYGLKLAELQRKVQTDVNSEYWLNVKCAYPDRQLFDWSMMRLRRPLYGVGDPFSMDADDQIRKKRDAERLSRLEEQAKNHMETRKRRFFAEILNAVREFQLQIQAFLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQSDGIEPLEDSETDLPESDGLKNGISKESPLEEDVDLIDSDRNGGDTSDLLEGQRQYNSAIHSIQEKVSEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEHKGVTGPHLIVAPKAVLPNWINEFSTWAPSITTILYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIHWLYLIVDEGHRLKNHECALARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPSKSQVILKCDLSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDIHKHKEEIFRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLNDFKFLRLDGSTKTEERGSLLRKFNAPDSAYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLQEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPLNKDDKVKIFDSGSVTGKRKRNEVVYADTLSDLQWMKAVENGQDISKLSVKGKRRDHLPVDNHAQASDDMGTEERLFRSEDTFDVTPASKRLKPEEINSQKHENEDVSVGGLNEHIFSWNTRRKKRSGYLGQGSFSDSRGQNSNGRANWN* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0038 1063 SMART helicmild6 711 795 IPR001650 -
Gso11g0038 1063 Coils Coil 886 906 - -
Gso11g0038 1063 Coils Coil 170 190 - -
Gso11g0038 1063 MobiDBLite consensus disorder prediction 1040 1063 - -
Gso11g0038 1063 SMART SnAC_2 888 949 IPR029295 GO:0042393
Gso11g0038 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 853 IPR027417 -
Gso11g0038 1063 SMART ultradead3 367 560 IPR014001 -
Gso11g0038 1063 MobiDBLite consensus disorder prediction 965 1022 - -
Gso11g0038 1063 Pfam SNF2-related domain 374 662 IPR000330 GO:0005524|GO:0140658
Gso11g0038 1063 MobiDBLite consensus disorder prediction 317 339 - -
Gso11g0038 1063 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 383 549 IPR014001 -
Gso11g0038 1063 Gene3D - 602 902 IPR027417 -
Gso11g0038 1063 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 685 852 IPR001650 -
Gso11g0038 1063 Gene3D - 340 595 IPR038718 -
Gso11g0038 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 596 IPR027417 -
Gso11g0038 1063 Pfam Snf2-ATP coupling, chromatin remodelling complex 889 949 IPR029295 GO:0042393
Gso11g0038 1063 CDD SF2_C_SNF 680 806 - -
Gso11g0038 1063 MobiDBLite consensus disorder prediction 287 342 - -
Gso11g0038 1063 Pfam Helicase conserved C-terminal domain 682 795 IPR001650 -
Gso11g0038 1063 PANTHER SNF2/RAD54 HELICASE FAMILY 3 1016 - -
Gso11g0038 1063 PANTHER ATP-DEPENDENT HELICASE BRM 3 1016 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0038 Gso-Chr11 315688 322943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0038 353 822 RAD5 or RAD16-like Gene Family AT1G02670 26.950 5.75e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso11g0038 SNF2_N 4.3e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0038 - - gmx:100775993 2096.24