Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0031 ATGTTTCACGCAAACATGTTTGATTCTCACCCTCACTTGCTTGATATGTCACCCCACAAGACTACTGCTTGCTCTGAGAGTGATTTGGGAAAGGCCTGCAGAGATGATGAGTACGAGACCAAATCTATCACTGACGCCATGGACGCTCCTTCTGGCGACGACCAAGATCCCAACCCGCGACCCAAAAAGAAGGGTTACCGCCGCCACACACAGCGCCAAATAGAAGAAATGGAAGCCTTCTTCAAGCAGTTTCCTCACCCGGATGACAAGCAAAGAAAAGAGCTGAGCCGTGAGCTGGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACTCAACATGAACGAAATGAGAATGCTATTTTGAAGACAGAAAATGAAAAGCTTCGCGCTGAGAACAACAGGTACAAGGAGGCCCTAAGCAATGCTACATGCCCCAACTGCGGAGGCTCAGCTGCTCTTGGCGAAATGTCCTTCGACGAGCAACACTTGAGGATTGAGAATGCTCGGTTAAGAGAAGAGATTGATAGGATTTCAGGAATTGCGGCCAAGTACGTTGGAAAGCCAGTGACTTCTTCGTACTCCAACCTTTCATCTCTGAATAACAACCACGTGCCTGTTGGTAAGTATGGATCACAGTCAGGCACGGTAGGAGAAATGTATGGAGGGAGTGACCTTTTTAGGTCACTCCCAGCTCCTGCTGATGCTGACAAACCCATGATTGTGGAGCTTGCTGTTGCAGCTATGGAGGAACTCACAAGACTAGCTCAGGCTGGAGACCCTTTGTGGGTCCCCAGCAACCACCATTCTGAGATTCTAAATGAAGAGGAATACTTGAGGACTTTCCCTAATAGAGGCTTAGGTCCCAAACCCTTGGGTTTGAGATCTGAAGCTTCAAGAGAATCAGTGGTGGTCATCATGAATCACATTAACCTTATTGATATCCTTATGGACGTGAACCAATGGTCAACTGTGTTTTGCGGTATTGTCTCGAGAGCGTTGACCCTTGAAGTCCTTTCAACTGGAGTAGCAGGAAACTACAACGGAGCCTTGCAAGTGATGTCATCTGAGTTCCAAGTCCCTTCACCACTTGTTCCTACTCGTGAGAACTATTTCGTAAGGTACTGTAAGCAGCAACCAGATGGGATATGGGCAGTGGTGGATGTTTCCTTGGATAATCTGCGACCCAATACAATCTCAAGAAGCCGAAGAAGGCCCTCTGGTTGTTTAATTCAAGAATTGCCAAATGGTTACTCCAAGGTTACATGGATTGAACATGTAGAAGTGGATGATAGAGCGGTGCATAGCATATATAGACCTCTGGTTAACTCGGGCCTGGCATTTGGAGCTAAACGCTGGGTAGCTACATTAGACAGACAATGCGAACGTCTTGCCAGTTCAATGGCCAACAACATTCCAGCAGGGGACCTATGTGTGATAACGAGTGCTGAGGGAAGGAAAAGTATGATGAAGCTGGCGGAGAGAATGGTAATGAGCTATTGCACTGGTGTTGGTGCTTCTACTGCACATGCTTGGACAACGCTGTCCGCAACCGGATGTGATGACGTAAGGGTCATGACAAGAAAGAGCACCGACGAACCTGGCAGGCCCCCCGGTATAGTGCTCAGTGCTGCCACTTCTTTCTGGCTTCCGGTTCCTCCAAATAGGGTTTTTGATTTTCTACGTGATGAAAACTCAAGAAATGAGTGGGACATTCTATCCAACGGGGGTCTAGTTCAAGAATTAGCACATATAGCAAATGGTCGTGATCCCGGCAACTGTGTCTCTTTACTTCGAGTCAATAGTGCAAATTCAAGCCAAAGCAATATGCTGATACTTCAAGAGAGTTGCACAGATTCTACTGGCTCATATGTAGTTTATGCTCCTGTGGATATTGTTGCTATGAATGTTGTCTTGAGTGGAGGAGATCCAGATTATGTTGCCCTGCTCCCCTCGGGCTTTGCTATTCTTCCTGATGGGCCTCCTGCATTAAATGGTGGGCCCATGCATGAAGTTGGATCTGGAGGTTCTCTACTCACAGTTGGATTCCAGATCTTAGTTGATTCAGCTCCAACCGCAAAGTTATCTCTGGGTTCAGTGGCCACTGTTAACAGTTTAATTAAGTGCACAGTTGAAAGGATCAAAGTTGCAGTCATACGTGACAACAACAACACCTGA 2199 0.4698 MFHANMFDSHPHLLDMSPHKTTACSESDLGKACRDDEYETKSITDAMDAPSGDDQDPNPRPKKKGYRRHTQRQIEEMEAFFKQFPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERNENAILKTENEKLRAENNRYKEALSNATCPNCGGSAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPVTSSYSNLSSLNNNHVPVGKYGSQSGTVGEMYGGSDLFRSLPAPADADKPMIVELAVAAMEELTRLAQAGDPLWVPSNHHSEILNEEEYLRTFPNRGLGPKPLGLRSEASRESVVVIMNHINLIDILMDVNQWSTVFCGIVSRALTLEVLSTGVAGNYNGALQVMSSEFQVPSPLVPTRENYFVRYCKQQPDGIWAVVDVSLDNLRPNTISRSRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVHSIYRPLVNSGLAFGAKRWVATLDRQCERLASSMANNIPAGDLCVITSAEGRKSMMKLAERMVMSYCTGVGASTAHAWTTLSATGCDDVRVMTRKSTDEPGRPPGIVLSAATSFWLPVPPNRVFDFLRDENSRNEWDILSNGGLVQELAHIANGRDPGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVVYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPPALNGGPMHEVGSGGSLLTVGFQILVDSAPTAKLSLGSVATVNSLIKCTVERIKVAVIRDNNNT* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0031 732 CDD homeodomain 63 121 IPR001356 GO:0003677
Gso11g0031 732 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 15 728 - -
Gso11g0031 732 MobiDBLite consensus disorder prediction 29 43 - -
Gso11g0031 732 Gene3D - 50 136 - -
Gso11g0031 732 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Gso11g0031 732 MobiDBLite consensus disorder prediction 1 70 - -
Gso11g0031 732 SUPERFAMILY Bet v1-like 491 721 - -
Gso11g0031 732 Coils Coil 119 149 - -
Gso11g0031 732 Pfam Homeodomain 63 118 IPR001356 GO:0003677
Gso11g0031 732 SUPERFAMILY Bet v1-like 242 472 - -
Gso11g0031 732 SUPERFAMILY Homeodomain-like 48 120 IPR009057 -
Gso11g0031 732 Pfam START domain 251 470 IPR002913 GO:0008289
Gso11g0031 732 SMART START_1 250 470 IPR002913 GO:0008289
Gso11g0031 732 CDD START_ArGLABRA2_like 245 469 - -
Gso11g0031 732 ProSiteProfiles START domain profile. 241 473 IPR002913 GO:0008289
Gso11g0031 732 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Gso11g0031 732 SMART HOX_1 62 124 IPR001356 GO:0003677
Gso11g0031 732 Gene3D - 316 472 IPR023393 -
Gso11g0031 732 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 728 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0031 Gso-Chr11 239685 247110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0031 1 728 Homeobox Transcription Factor Family AT4G21750 75.948 0.0 1161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso11g0031 START 8.9e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0031 K09338 - gmx:100782240 1470.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2050 1 56891672 56898886 Gso11g0031 11 239685 247110 GST
Gso11g0031 11 239685 247110 Gso20g1136 20 41115471 41121678 PCT
Gso11g0031 11 239685 247110 Gso10g2241 10 49515695 49521683 PCT
Gso20g1136 20 41115471 41121678 Gso11g0031 11 239685 247110 PCT
Gso10g2241 10 49515695 49521683 Gso11g0031 11 239685 247110 PCT