Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0025 ATGATTCATTCTCTAATGGTTTCAAAACCCTTTCAATTGCTCCTTCTTTGCACTTTTGCTTTATTTTCAGGCGTTGTATTTGCCGATCCTCCGTATTATATTTGTTCCACAAGCAGCAGTTTTGCAAAAGGCAGTTCTTTTGAAAACAATCTAACGAACCTCCTTTCCTCTTTATCCTCCATTGCTTCAAACTACAAATTCTATAATACTTCTTCGTATGGGATTGGCCCAGATAGAGTTTATGGCCTCTACATGTGCCTCGACTATATTACAAACGAATCTTGCAAGACATGCATCACTACAGCAACAGAGGACATTGTCAAACTCTGTCCTCGAGCCACAGAAGCAGTTGTTTGGGAGGAGTTGTGTCAATTACGTTATTCCAACAGCAATTTCATGGGTATGTTGAATGTCACAGGGAACATTGGCTTAGATAATAAACAGAATCTTTCAGAGCCAGAGAAATTTGAGTCTGCTGTGAATCAGACAATAAGTAATCTTACTAAGGTGGCATCTTTTGGTGTTTCGGCAAACATGTATGCTACTGGAGAAGTCCCCTTTGAGGATGAAACAATATATGCCTTAGTGCAGTGCACCAGAGATTTAACTGCCAGTGATTGCAGTAGGTGCCTGCAAAGTGCCATTGGAGATATACCAGGTTGCTGCTATGCCTCCATTGGGGGTAGAGTTCTGAGCCGTAGCTGTTATTTGAGGTATGAATTTTACGCCTTTTATCATGGTGCAACAGGACCCACGGATTCTTCAATTGGGAAGAAAGAAGGCGAAAATAATTCAAGCAAAATATGGGTTATTACAGGAATTATAGTTGTGGTTGGCTTGGTGATAGTATTTTTCATTTTCGGACTGTACCTTGTCAGGAATAAAAGAAAACGGCAGAGTAAGAATGGAATAGACAATCATCAAATCAATCTTGGATCTCTTCGAGTGGCTACCAATAATTTTTCTGATTTGAATAAGCTTGGACAAGGTGGCTTTGGCCCTGTTTACAAGGGGAAACTTAGTGATGGTCAAGAAGTAGCAATCAAGAGGCTCTCAACTTGCTCTGAACAAGGCTCAGAGGAATTCATAAACGAGGTTCTTCTGATAATGCAACTTCAACACAAAAATCTTGTAAAGCTTCTTGGATTTTGTGTAGATGGAGAAGAGAAGCTTCTGGTATATGAATTTTTACCCAATGGCAGTCTTGATGTTGTACTCTTTGATCCAAACCAACGTGAACGACTAGATTGGACTAAACGCCTGGATATCATAAATGGAATAGCAAGGGGGATACTATATCTTCATGAGGATTCTCGACTAAAAATAATCCATAGAGACCTAAAAGCAAGTAATATATTGTTGGACTATGACATGAACCCAAAGATCTCAGACTTTGGAATGGCAAGGATATTTGCAGGAAGTGAAGGTGAAGCTAACACTGCTACAATAGTTGGCACATATGGGTATATGGCTCCAGAGTATGCAATGGAGGGACTGTATTCCATAAAATCTGATGTTTTTGGGTTTGGTGTACTATTGCTTGAGATCATTGCAGGGAAACGTAACGCGGGTTTCTATCACTCTAAAAACACTCCAAGCCTTCTATCATATGCATGGCATCTATGGAATGAGGGAAAGGAGATGGAATTAATTGATCCCTTGTTAGTTGATTCATGCCCCGGAGATGAGTTTTTGAGATACATGCATATTGGACTGCTATGTGTTCAAGAAGATGCATATGATAGGCCAACCATGTCTTCCGTTGTTTTGATGTTGAAGAATGAATCAGCAATGTTAGGCCAACCAGAAAGACCACCTTTCTCTCTTGGGAGATTCAATGCTAATGAGCCAGGTTGCGAAGATTACTCACTCAATTTCTTAACTTTGTCAGATATAGTGCCCCAGTGA 1908 0.4009 MIHSLMVSKPFQLLLLCTFALFSGVVFADPPYYICSTSSSFAKGSSFENNLTNLLSSLSSIASNYKFYNTSSYGIGPDRVYGLYMCLDYITNESCKTCITTATEDIVKLCPRATEAVVWEELCQLRYSNSNFMGMLNVTGNIGLDNKQNLSEPEKFESAVNQTISNLTKVASFGVSANMYATGEVPFEDETIYALVQCTRDLTASDCSRCLQSAIGDIPGCCYASIGGRVLSRSCYLRYEFYAFYHGATGPTDSSIGKKEGENNSSKIWVITGIIVVVGLVIVFFIFGLYLVRNKRKRQSKNGIDNHQINLGSLRVATNNFSDLNKLGQGGFGPVYKGKLSDGQEVAIKRLSTCSEQGSEEFINEVLLIMQLQHKNLVKLLGFCVDGEEKLLVYEFLPNGSLDVVLFDPNQRERLDWTKRLDIINGIARGILYLHEDSRLKIIHRDLKASNILLDYDMNPKISDFGMARIFAGSEGEANTATIVGTYGYMAPEYAMEGLYSIKSDVFGFGVLLLEIIAGKRNAGFYHSKNTPSLLSYAWHLWNEGKEMELIDPLLVDSCPGDEFLRYMHIGLLCVQEDAYDRPTMSSVVLMLKNESAMLGQPERPPFSLGRFNANEPGCEDYSLNFLTLSDIVPQ* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0025 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Gso11g0025 635 Gene3D - 142 244 IPR038408 -
Gso11g0025 635 Gene3D - 30 132 IPR038408 -
Gso11g0025 635 Pfam Salt stress response/antifungal 35 129 IPR002902 -
Gso11g0025 635 Pfam Salt stress response/antifungal 148 241 IPR002902 -
Gso11g0025 635 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Gso11g0025 635 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 64 632 - -
Gso11g0025 635 SMART serkin_6 321 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0025 635 Pfam Protein tyrosine and serine/threonine kinase 325 589 IPR001245 GO:0004672|GO:0006468
Gso11g0025 635 CDD STKc_IRAK 327 594 - -
Gso11g0025 635 ProSiteProfiles Protein kinase domain profile. 321 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g0025 635 Gene3D Phosphorylase Kinase; domain 1 289 396 - -
Gso11g0025 635 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 64 632 - -
Gso11g0025 635 Gene3D Transferase(Phosphotransferase) domain 1 397 601 - -
Gso11g0025 635 SUPERFAMILY Protein kinase-like (PK-like) 307 618 IPR011009 -
Gso11g0025 635 ProSiteProfiles Gnk2-homologous domain profile. 138 244 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0025 Gso-Chr11 195102 198357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0025 26 609 Receptor kinase-like Gene Family AT4G05200 44.084 4.32e-178 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso11g0025 PK_Tyr_Ser-Thr 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0025 - - gmx:100798666 1237.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g2055 1 56932976 56935827 Gso11g0025 11 195102 198357 GST