Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2616 ATGGCCATGGCGGCTGCATTTGCAACTACAACTGCAACACTGAGACTGCCAAATGTTGGAGAAAGCAAAAGTTTGCAGCTCCGTAAGTGTAACCCTAATCCCAATAAGCTTAAGGTTATGCGGGGGTTTGGCGGTTGTTCTGGAGTGGCAGTGAGTGTGAGAATTGGAATTGGAAGGGTTCGGGCGAGTTCGAGTTCTTCTTCTTCTGAGGAGGAGGAGGAGGCAGTGAGTGTGCAGTCAAAAGTGACTCAGAAAGTATACTTCGACGTGAGTATTGGAAATCCAGTTGGGAAGTTTGTGGGACGGATTGTGATTGGACTGTACGGCGACGATGTCCCCCAAACGGCTGAGAACTTCCGTGCCCTTTGTACTGGCGAGAAGGGCTTTGGATATAAGGGTTCTACCGTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAATTTGTCTCACACTGGACCGGGAGTTGTCAGCATGGCAAATGCAGGTCCCAACACAAATGGGAGTCAGTTTTTTATATGCACTGTCAAGACACCTTGGCTGGATCAGAGGCATGTGGTATTTGGCCAAGTTTTGGAAGGCATGGCCATTGTTAGGTTGATCGAATCACAGGAGACAGATAGGGGTGACCGTCCTAGAAAGAAGGTGACCATTAGTGACTGTGGTGAGCTTCCAATTGCTTGA 756 0.4722 MAMAAAFATTTATLRLPNVGESKSLQLRKCNPNPNKLKVMRGFGGCSGVAVSVRIGIGRVRASSSSSSSEEEEEAVSVQSKVTQKVYFDVSIGNPVGKFVGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTVHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMAIVRLIESQETDRGDRPRKKVTISDCGELPIA* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2616 251 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 100 246 IPR002130 GO:0000413|GO:0003755
Gso10g2616 251 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 5, CHLOROPLASTIC 64 248 - -
Gso10g2616 251 Gene3D - 70 250 IPR029000 -
Gso10g2616 251 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 131 148 IPR020892 GO:0003755|GO:0006457
Gso10g2616 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Gso10g2616 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 148 IPR002130 GO:0000413|GO:0003755
Gso10g2616 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 179 194 IPR002130 GO:0000413|GO:0003755
Gso10g2616 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 194 206 IPR002130 GO:0000413|GO:0003755
Gso10g2616 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 207 222 IPR002130 GO:0000413|GO:0003755
Gso10g2616 251 CDD cyclophilin_ABH_like 85 246 - -
Gso10g2616 251 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 64 248 - -
Gso10g2616 251 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 97 247 IPR002130 GO:0000413|GO:0003755
Gso10g2616 251 SUPERFAMILY Cyclophilin-like 81 248 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2616 Gso-Chr10 53091044 53093305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2616 101 242 U-box Gene Family AT5G67530 48.252 1.24e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2616 K03768 - gmx:100796688 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g2038 20 50900250 50902874 Gso10g2616 10 53091044 53093305 GST