Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2609 ATGTATCTCCTGGACTGGACTCTCTTGCCTCCATGTATCCTTCTTCGTTGCCTGAAAGCCTTGGAATCACAGTTTAGTCTGGAGAAGCTATTGCACATTCCTCGAGATTCTGTCCCTTGTAAAATCCGTGCTAAGCGAGGTTGTGCTACTCATCCCCGTAGCATTGCCGAGCGTCAGAGAAGAACTAGAATCAGTGGCAAGCTCAAGAAATTACAGGACCTTGTATCCAATATGGATAAGCAAACATGCTATGCTGACATGCTCGATTTGGCCGTTCAACATATTAAAGGTCTTCAAACTCAGCTTCAGAACCTTCACAGAGAACTGGAGAATTGCACCTGCGGATGCAAACAAAGCAAATAA 363 0.449 MYLLDWTLLPPCILLRCLKALESQFSLEKLLHIPRDSVPCKIRAKRGCATHPRSIAERQRRTRISGKLKKLQDLVSNMDKQTCYADMLDLAVQHIKGLQTQLQNLHRELENCTCGCKQSK* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2609 120 Pfam Helix-loop-helix DNA-binding domain 53 99 IPR011598 GO:0046983
Gso10g2609 120 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 113 - -
Gso10g2609 120 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 98 IPR011598 GO:0046983
Gso10g2609 120 SMART finulus 54 104 IPR011598 GO:0046983
Gso10g2609 120 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 113 IPR036638 GO:0046983
Gso10g2609 120 PANTHER TRANSCRIPTION FACTOR BHLH129 26 113 - -
Gso10g2609 120 Coils Coil 88 108 - -
Gso10g2609 120 Gene3D - 49 119 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2609 Gso-Chr10 53013402 53014785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2609 20 118 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 72.222 4.57e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g2609 HLH 5.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2609 - - var:108325944 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g2029 20 50829499 50831781 Gso10g2609 10 53013402 53014785 GST