Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2581 ATGGCATCAACATCTTGCGTTGGTAACAGCTCATTACCTATAAAAGATGCAGCAGGTTCGAGTTATTGTGCATATCCTTTTTCTCTAGCAAAATATGAGGAGGTTGTAGACAATCCCCAGCTCTTCATGTTTACCTTGGAGAAACTTCACGCCGCTATGGGTACCAAGTTCATGATTCCCATTGTTGGAGGAAGAGAACTAGATTTGCATCGCCTCTTTGTCGAAGTGACTTCTCGAGGAGGGATTGCCAAAATAATTAGAGAGAGGAAATGGAAAGACGTAACTTCAGTCTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGCTTCATTGCTCTACCATTATGAACAAATTTACTTCTTTAAAGCCCGTGAATGGGACCCTACTGCTCCTGATGCTTTGCAGAATCAATCAACCCTGCCAGTTCCTCCTCCAAAAATGCAGTTTCCGCAGCCTTTGTCAGAAATTCAACCAGCTGTCTTTCAACAGTCAAATATTAATGCTGCTAAATTGCCTGAAGCAATGGCAGCATCTTCGGCAGGTTCTCCAGTCATTGGGGTCATTGATGGGAAGTTTGAAAGTGGGTATCTAGTTACAGTCACAATTGGTTCTGAGAAACTCAAAGGCGTGCTTTATCAAGCTCCACAAAACCCTGTATTGGTTGCATCCCATCATAGTGCCTCAGCTAAGAACAACAATGCTTCTGCTTCATTGGGTGTCCATCGTCGACGACGCAGGAAGAAATCAGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGGTACAATTTCTTCTTTGCTGAGCAGCATGCAAGACTAAAGCTACTTCATCATGGAAAGGACAGAGAGATTAGTAGGATGATTGGTGAACTTTGGAACAAGTTAAAAGAATCAGAAAAGACTGTTTATCAAGAGAAGGCCATGAAGGATAAAGAGAGGTACAGAGCAGAAATGGAGGATTATCGGGAGAAACAGAAGATGGGCCAAGTTATCAGCGATGCTGTGCCACTTCAACAACGACTTCCCGAACCGGATGCAGACATGTTGGATGTTGACATAAAAATGGATGAAGCTGAGGGAGATTCACCTCAAACTCCAGAGGAGAGTTCTGGTGGAAGTGACTATGAAGATTATAATAAAACTGCAGAGAGAGGCTTTGATATGGATGCATTGCCTGTTATAGGAATGGGAGCAGAAACAAGCTATTTGGGTTCGGAAGAGAAGTCATCTAAGGGGGGTTTATGA 1278 0.428 MASTSCVGNSSLPIKDAAGSSYCAYPFSLAKYEEVVDNPQLFMFTLEKLHAAMGTKFMIPIVGGRELDLHRLFVEVTSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYFFKAREWDPTAPDALQNQSTLPVPPPKMQFPQPLSEIQPAVFQQSNINAAKLPEAMAASSAGSPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPVLVASHHSASAKNNNASASLGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLHHGKDREISRMIGELWNKLKESEKTVYQEKAMKDKERYRAEMEDYREKQKMGQVISDAVPLQQRLPEPDADMLDVDIKMDEAEGDSPQTPEESSGGSDYEDYNKTAERGFDMDALPVIGMGAETSYLGSEEKSSKGGL* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2581 425 CDD HMGB-UBF_HMG-box 266 330 - -
Gso10g2581 425 SMART ARID_2 33 123 - -
Gso10g2581 425 PRINTS High mobility group (HMG1/HMG2) protein signature 298 317 - -
Gso10g2581 425 PRINTS High mobility group (HMG1/HMG2) protein signature 317 337 - -
Gso10g2581 425 Gene3D - 28 139 IPR036431 GO:0003677
Gso10g2581 425 Coils Coil 315 335 - -
Gso10g2581 425 MobiDBLite consensus disorder prediction 246 260 - -
Gso10g2581 425 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 401 - -
Gso10g2581 425 MobiDBLite consensus disorder prediction 233 273 - -
Gso10g2581 425 Gene3D High mobility group box domain 250 345 IPR036910 -
Gso10g2581 425 MobiDBLite consensus disorder prediction 366 402 - -
Gso10g2581 425 SMART bright_3 37 128 IPR001606 GO:0003677
Gso10g2581 425 SMART hmgende2 265 334 IPR009071 -
Gso10g2581 425 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 266 333 IPR009071 -
Gso10g2581 425 Pfam ARID/BRIGHT DNA binding domain 40 123 IPR001606 GO:0003677
Gso10g2581 425 SUPERFAMILY HMG-box 254 337 IPR036910 -
Gso10g2581 425 Pfam HMG (high mobility group) box 266 333 IPR009071 -
Gso10g2581 425 ProSiteProfiles ARID domain profile. 36 127 IPR001606 GO:0003677
Gso10g2581 425 SUPERFAMILY ARID-like 35 136 IPR036431 GO:0003677
Gso10g2581 425 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 401 - -
Gso10g2581 425 CDD ARID_HMGB9-like 38 123 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2581 Gso-Chr10 52724201 52729400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2581 1 366 ARID Transcription Factor Family AT1G04880 61.155 2.50e-138 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gso10g2581 ARID 7.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2581 - - gmx:100783284 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1994 20 50487233 50492594 Gso10g2581 10 52724201 52729400 GST