Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2580 ATGGCAACATCATCTTCAGCAGACTCTACAGTGATTGGAGTGATCGATCAGAAATTTGAAGGGGGCTATGTAGTTACCGTGACAATGGGTTCTGAGCAATTGAATGGTGTACTTTATTATGCTCAAGAGGATTCTGTATTATTGCCTGCACCATCCCATAACAACAACAATGCTGCTGCTGCTTCATTGCAGAAGAAGAAGAGACGCAGAAGCAAATCGGAAATAAAAAGGAGAAACCCTGCTCTTCCAAAACCCAAAAAAACTGGCTACAATTTCTTCTTTGCTGAAGAACATGCAAGATTAAAGCCATATCACCAAGGAAAGGAGACAGATATTGGGAGGATGATTGGTGAAAACTGGAGCAAGTTAACAGAGTCCGAAAAAATGGTGTATCAAGAGATGTCCAATAAGGATAAAGAGAGATACTTAAAAGAAATGGAAGAATATGTGGAGAAACTGAAGGCGGACCAAGTCATCGTTGATGCTGTGCCACTTCGACAATGGCCTCCTCAACAGGATACAGACATTCAAATGGAAGAAGCTGAGGCTGGAGAGGGAAGTTTTGATATGAATGCAATGTCTCTTATGGATTCAGAAGAGAGGTTTTCTTATTAG 615 0.4098 MATSSSADSTVIGVIDQKFEGGYVVTVTMGSEQLNGVLYYAQEDSVLLPAPSHNNNNAAAASLQKKKRRRSKSEIKRRNPALPKPKKTGYNFFFAEEHARLKPYHQGKETDIGRMIGENWSKLTESEKMVYQEMSNKDKERYLKEMEEYVEKLKADQVIVDAVPLRQWPPQQDTDIQMEEAEAGEGSFDMNAMSLMDSEERFSY* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2580 204 CDD HMGB-UBF_HMG-box 83 147 - -
Gso10g2580 204 Pfam HMG (high mobility group) box 83 149 IPR009071 -
Gso10g2580 204 MobiDBLite consensus disorder prediction 49 88 - -
Gso10g2580 204 Gene3D High mobility group box domain 63 161 IPR036910 -
Gso10g2580 204 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 184 - -
Gso10g2580 204 Coils Coil 136 156 - -
Gso10g2580 204 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 83 150 IPR009071 -
Gso10g2580 204 SUPERFAMILY HMG-box 80 153 IPR036910 -
Gso10g2580 204 SMART hmgende2 82 151 IPR009071 -
Gso10g2580 204 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 6 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2580 Gso-Chr10 52716674 52717462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2580 5 182 ARID Transcription Factor Family AT1G04880 53.927 3.26e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gso10g2580 HMG_box 3.1e-13 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2580 - - gmx:100820147 387.111