Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2568 ATGCCATTCCGAGTTCGCACTGCAACTGCAAGTCGCTGGTGGTCTCTGCACACCGTTTTCAACACTCATTGTCTTTGCCGCAACTTGTATTATTCGGCTTTGTCTAAACCTCAGTTTTCTGGCAATTGCGACGATTTTTTGCAGTGGTTGGAGCGGAAAGCTGCCTGTAGTATTTCCTCCTCACTTTTTATTGGCAATTCTTCGTATGGAAGGTCTCTGTTTGCCTCTAAGATAATACAAACTGGAGATTGCATTTTAAAGGTTCCTTACAGAGTGCAAATAACTGCAGATAATCTCCTTCCTGAAATCAGATCTTTGATTGGTGAGGAAGTTGGAAATATTGCAAAACTTGCTACTGTTATTCTGATCGAGAAGAAACTGGGTCAGGGCTCTGAGTGGTATCCTTATATCAGCTGTCTTCCACAACAAGGAGAGCTGCATAATACGGTATTTTGGACTGAAAGTGAGTTGGAGATGATTCGTCCAAGTTCAGTTTATCAGGAAACTATTGACCAAAAATCTCAAATTGAAAAGGACTTTTTGGCAATCAAGCATATTTTTGAATGTTCCCATCAAAGTTTTGGAGATTCTACCTACAAGGACTTCATGCATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAATGGTTTAGCTCTGATTCCATTTGCAGATTTCTTAAACCACGATGGAGTTTCAGAAGCAATTGTAATGAGTGATGATGACAAACAATGCTCAGAAATTATTGCTGATCGTGACTATGCCCCTGGTGAACAGGTACTAATAAGATATGGAAAGTTTTCAAATGCTACATTAATGCTGGACTTTGGTTTTACAATTCCATACAACATTTACGATCAGGTTCAGATCCAGTTTGATATTCCTAAGCATGATCCTCTGCGGGACATGAAGTTGGAACTCTTGCATCAGTACTTTATACCTCCACCTGAAGATATGAAGGGCTTGTCACATCCTGTGAATTCCTTCAGCATCAAGGAGGTGAAGTCTGATAGTGGAAAAGGGAAGGGTCTTCCACAATCACTTCGTGCGCTTGCTCGTGTTCTTTCTTGTACAACATCTCAGGAAATTGACAATTTGATTGCGGAAGCTGCTCAAACTGATGGTAGGCTGGCTAGGCGCCCTTTACAGGATATCAGCAAAGAGATACAAGCACACATGATGTTGTTGTCATTATTCATCCAATTAATTGAGGAGCGCAGTGTGGCTATTATGTCACTGGATTCTCCCTCCTTGTGTGGAAGATTTTCTGTTAGAAAACTAATGGCTCAAGATCTCCTACAAGCCACAGGATTATCAAAGAGGTTAAGCTTCCAACAGATGTAG 1350 0.4133 MPFRVRTATASRWWSLHTVFNTHCLCRNLYYSALSKPQFSGNCDDFLQWLERKAACSISSSLFIGNSSYGRSLFASKIIQTGDCILKVPYRVQITADNLLPEIRSLIGEEVGNIAKLATVILIEKKLGQGSEWYPYISCLPQQGELHNTVFWTESELEMIRPSSVYQETIDQKSQIEKDFLAIKHIFECSHQSFGDSTYKDFMHACTLVGSRAWGSTNGLALIPFADFLNHDGVSEAIVMSDDDKQCSEIIADRDYAPGEQVLIRYGKFSNATLMLDFGFTIPYNIYDQVQIQFDIPKHDPLRDMKLELLHQYFIPPPEDMKGLSHPVNSFSIKEVKSDSGKGKGLPQSLRALARVLSCTTSQEIDNLIAEAAQTDGRLARRPLQDISKEIQAHMMLLSLFIQLIEERSVAIMSLDSPSLCGRFSVRKLMAQDLLQATGLSKRLSFQQM* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2568 449 CDD SET_RBCMT 67 281 IPR044431 GO:0016279|GO:0018022
Gso10g2568 449 Gene3D - 283 443 IPR036464 -
Gso10g2568 449 Pfam SET domain 70 267 IPR001214 GO:0005515
Gso10g2568 449 PANTHER OS01G0976450 PROTEIN 40 436 - -
Gso10g2568 449 Gene3D set domain protein methyltransferase, domain 1 39 280 - -
Gso10g2568 449 SUPERFAMILY SET domain 42 285 IPR046341 -
Gso10g2568 449 Pfam Rubisco LSMT substrate-binding 298 406 IPR015353 -
Gso10g2568 449 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 40 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2568 Gso-Chr10 52625010 52633176 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso10g2568 SET 2.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2568 K19199 - gmx:100818002 866.685