Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2548 ATGGTTCTATCAAACAAGAAACTGAAGCTTAAGCTGAGAGCTGAATTAGCCCAAAGCAACTCCAACGCCGCCGCTGAACCCCCTTCATTTTCTATTAATAATAATAACTCTCTCAAAACTCTTCTGGACTCTGCCACGCCCACACCCAGATTCTTCAAGAGAGAGAAGCGAAGAAAGCTTCGATCCCACCAACCTCCACAACAACCCAACAAGGAAAATGAAACTGAAACACAGGGTTCGCCCAATAAGAAGACAAAGAGGAAGAAGCTAGAGGACGATGACGTGGCAGCAACTGGAGTTTCCGACGCACCAAAGAAGAAGAAAAACCCCAGGACGGCTAAGGAAAACGAATCTAATGGTGGAGGGGAAATGCCAGAGGCTACAGAGTTAACCAAGACCAATACAACTACCAGTCAAGACAATGGTGATGCTCCTAATACAAATACAAAGATTTATGTTGGAGGAATTCCCTATTATTCAACTGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGACTTTTCCTGAAACTGGCAAGTTTAGAGGGATTGCCATTATTACTTTCAAGACTGAAGCAGCAGCCAAAAGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAACTCGAGCCAATAAAGCCTCAGATTTTGCTCCAGAAATTTTGGAGGGGTACAATAGAATATATGTTGGAAATTTGTCGTGGGATATAACAGAGGAAGAACTGAGGAAATTCTTCAATAATTCTGAGATAACATCGCTACGATTCGGTATGGACAAGGAGACAGGAGAGTTTCGAGGGTATGCCCATGTGGATTTTGGTGATAGTCAGTCACTAAAAAAAGCACTTGCATTGGACCAAAATGTTTTGTTTGGGAGACCTGTCAGGATAAGTTGTGCGGTTCCTTTGAAGAAAAAAACTGGAACTCATGCAAGCTCCACAGTTAATGAAGCTAATGGTGATAAATCAAGTTCCACAGGAAGTGACAAGATAAATGGAGCTGATGGTGATAAATCAAGTTCCACAGGAAGTGGCAAGATGAGGAGGAGGACATGCTATGAGTGTGGTGAGAAAGGACATACATTTGCGGCATGCCCAACGAAACAAACAGTTGCTGCAACTACAACCTAA 1185 0.4253 MVLSNKKLKLKLRAELAQSNSNAAAEPPSFSINNNNSLKTLLDSATPTPRFFKREKRRKLRSHQPPQQPNKENETETQGSPNKKTKRKKLEDDDVAATGVSDAPKKKKNPRTAKENESNGGGEMPEATELTKTNTTTSQDNGDAPNTNTKIYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFPETGKFRGIAIITFKTEAAAKRALALDGADMGGLFLKIQPYKATRANKASDFAPEILEGYNRIYVGNLSWDITEEELRKFFNNSEITSLRFGMDKETGEFRGYAHVDFGDSQSLKKALALDQNVLFGRPVRISCAVPLKKKTGTHASSTVNEANGDKSSSTGSDKINGADGDKSSSTGSGKMRRRTCYECGEKGHTFAACPTKQTVAATTT* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2548 394 SUPERFAMILY RNA-binding domain, RBD 140 226 IPR035979 GO:0003676
Gso10g2548 394 MobiDBLite consensus disorder prediction 17 127 - -
Gso10g2548 394 CDD RRM2_PHIP1 245 316 IPR034362 -
Gso10g2548 394 MobiDBLite consensus disorder prediction 77 114 - -
Gso10g2548 394 Gene3D - 240 329 IPR012677 -
Gso10g2548 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 320 IPR000504 GO:0003723
Gso10g2548 394 MobiDBLite consensus disorder prediction 17 44 - -
Gso10g2548 394 Gene3D - 344 392 - -
Gso10g2548 394 SUPERFAMILY RNA-binding domain, RBD 237 324 IPR035979 GO:0003676
Gso10g2548 394 ProSiteProfiles Zinc finger CCHC-type profile. 370 384 IPR001878 GO:0003676|GO:0008270
Gso10g2548 394 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 53 391 - -
Gso10g2548 394 PANTHER PHRAGMOPLASTIN INTERACTING PROTEIN 1-RELATED 53 391 - -
Gso10g2548 394 MobiDBLite consensus disorder prediction 327 365 - -
Gso10g2548 394 Gene3D - 50 235 IPR012677 -
Gso10g2548 394 SUPERFAMILY Retrovirus zinc finger-like domains 354 388 IPR036875 GO:0003676|GO:0008270
Gso10g2548 394 SMART rrm1_1 150 222 IPR000504 GO:0003723
Gso10g2548 394 SMART rrm1_1 245 316 IPR000504 GO:0003723
Gso10g2548 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 149 226 IPR000504 GO:0003723
Gso10g2548 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 313 IPR000504 GO:0003723
Gso10g2548 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 151 217 IPR000504 GO:0003723
Gso10g2548 394 CDD RRM1_PHIP1 151 222 IPR034361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2548 Gso-Chr10 52447232 52449207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2548 148 318 Eukaryotic Initiation Factors Gene Family AT3G16380 28.177 3.73e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2548 - - gmx:100817668 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0780 20 37213934 37215959 Gso10g2548 10 52447232 52449207 GST