Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2545 ATGAAGAGAGAAAGAGAAGTTGATAGCATAACCATGGCAAACTACTTGATGTTGCTTTCTCGAACCACCACCAACTTGAACACTTCCGACAACCGTGTGTTTGAGTGCAAGACATGTAATCGGAGGTTCACGTCGTTTCAGGCATTGGGTGGCCACTGTGCGAGTCATAAGAAGCCAAGGTTGATGGGAGAGAGTGATGGCCAAGTGCTAATTCATGGTTCACCACCAAAGCCTAAAACGCACGAGTGTTCCATTTGTGGATTGGAGTTTGCAATAGGACAAGCTTTGGGAGGACACATGAGGCGTCATAGAGCTGCAGCAGCAGCAGCATCAAATAGAAACATGCACACTACTATTAATTCTTTGATGAGTTCTGGCAGCAGTAGTGGTGGTAGCACTGTTGATAATACTTTACCACCAAACATGAACCACAAGGTTAACGACACCAAGAGGATTTTGTTTCCTGATTTGAATTTGACGCCTCTAGAGAATGACTTGGAGTTTTTGAAGATTGGACGACAAGCAACTCCTTTGGTTCACTGCTTTAATTGA 552 0.442 MKREREVDSITMANYLMLLSRTTTNLNTSDNRVFECKTCNRRFTSFQALGGHCASHKKPRLMGESDGQVLIHGSPPKPKTHECSICGLEFAIGQALGGHMRRHRAAAAAASNRNMHTTINSLMSSGSSSGGSTVDNTLPPNMNHKVNDTKRILFPDLNLTPLENDLEFLKIGRQATPLVHCFN* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2545 183 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Gso10g2545 183 PANTHER CYS2-HIS2 ZINC FINGER TRANSCRIPTION FACTOR 5 182 - -
Gso10g2545 183 Gene3D Classic Zinc Finger 19 106 - -
Gso10g2545 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Gso10g2545 183 SMART c2h2final6 34 56 IPR013087 -
Gso10g2545 183 SMART c2h2final6 81 103 IPR013087 -
Gso10g2545 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Gso10g2545 183 MobiDBLite consensus disorder prediction 122 142 - -
Gso10g2545 183 PANTHER ZINC FINGER PROTEIN ZAT5 5 182 - -
Gso10g2545 183 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Gso10g2545 183 Pfam C2H2-type zinc finger 81 105 - -
Gso10g2545 183 Pfam C2H2-type zinc finger 33 59 - -
Gso10g2545 183 SUPERFAMILY beta-beta-alpha zinc fingers 32 103 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2545 Gso-Chr10 52425533 52426397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2545 1 179 C2H2 Transcription Factor Family AT2G37430 40.206 3.54e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g2545 zf-C2H2_6 9.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2545 - - gmx:100816598 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0784 20 37235784 37236562 Gso10g2545 10 52425533 52426397 GST