Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2542 ATGGTGAACGTGGTGGAATTGCAGAAACAGTTGCAGAGTGGGAATGTGAATGTTGATGCCAACGGGGAACTCATGTATGTCAAGGTCATGACCGATGAACAGTTGGAAACTCTGAGGAAGCAAATAGCAGTTTATGGCACCATTTGTGAGCAACTTATTGAGATGCACAGAACACTCTCAGCTCAACAGGATCTTGCAGGGGTTAGATTGGGAAACATATACTGTGACCCATTGATGACATCTGGTGGGCACAAAATAACATCAAGACAAAGGTGGACACCTACACCTGTGCAGCTTCAAATTCTTGAACGTATATTTGATCAAGGGAATGGAACTCCAAGCAAGGAAAAAATCAAGGAAATCACTGCTGAACTGGGCCAGCATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAGAATAGGCGTGCTCGATCCAAAAGAAAGCTGCAAAATGTGGCTGCTTATAGCAACACTGAATCAGAAGTGGAGACTGAGGTTGATTCTAAGGATAAGAAGACAAAAGCTGAGGAAGAGTTTCAGTCCCAACATAATAATAACATAAGTACAACTTCTGGAGGGGCTGAAAAGTTGTGCTTCCAGAACCCTCAAGTACACTCTGATTACTTGCAGTACTTGAACCCTGCAGATTCCAACAAACCATATTCCATGTTCCAAACAGAAGACAATCTGAAATCCACAAGAAATTTGAGTCATGTGTCTGTTTTCAATGAGGTGCTGTCAAACTCAAGGAGTGAGCATGTAGGTGGGAAAATGGAAGTTGGTGGGAGTGTGAGCTACAATTTATTCCACCAAACAGGACACTTCAATCTAGCGGGTTAA 846 0.4232 MVNVVELQKQLQSGNVNVDANGELMYVKVMTDEQLETLRKQIAVYGTICEQLIEMHRTLSAQQDLAGVRLGNIYCDPLMTSGGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRKLQNVAAYSNTESEVETEVDSKDKKTKAEEEFQSQHNNNISTTSGGAEKLCFQNPQVHSDYLQYLNPADSNKPYSMFQTEDNLKSTRNLSHVSVFNEVLSNSRSEHVGGKMEVGGSVSYNLFHQTGHFNLAG* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2542 281 ProSiteProfiles 'Homeobox' domain profile. 85 150 IPR001356 GO:0003677
Gso10g2542 281 PANTHER - 5 280 - -
Gso10g2542 281 Gene3D - 91 155 - -
Gso10g2542 281 SMART HOX_1 87 154 IPR001356 GO:0003677
Gso10g2542 281 CDD homeodomain 89 150 IPR001356 GO:0003677
Gso10g2542 281 Pfam Homeodomain 89 149 IPR001356 GO:0003677
Gso10g2542 281 PANTHER WUSCHEL-RELATED HOMEOBOX 13 5 280 IPR044559 GO:0003700
Gso10g2542 281 SUPERFAMILY Homeodomain-like 87 152 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2542 Gso-Chr10 52405577 52408026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2542 25 281 Wox Gene Family AT4G35550 53.704 2.13e-84 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gso10g2542 Homeodomain 8.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2542 - - gmx:100815539 564.688