Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2531 ATGGATGGGTGTATATATATTAGTTCGTCAGATGATGACTTGGAGGAGATAGATGATCAAGGGAGGACACTTCCGCAATGGGCTACTACTACTGTAAAGAGTTCGGATAATGGTGGATGGTCTAGGCGGGATAGTTTTTCAAGAGGGGCAAATAGTTCGAACCCAAGCTCTTCTAATGTTTATAATCATTCACAAGTCAAGCCTCAAACCCCACCCGTGTCCAGCACCAATACACTGAACCACAGAATTGCACGAAGAGATGAACCTTCCTACCATGCCCAGAATGGAAACACAAGTCAGCATCAGACAGTTAATTCCCGAATTTCAAATAATCATGGTGCAGATTATGAGAAAATGTCATCTCAGCAAGCTTTCAAGAGGACCCTTCAGTCATCTCTTCAACCTTCAGCAACAAGGGCTCTTCCTTCTTCATTTGCACCAGACAGCAGATTAAGAAACTTAAAAGATAGCACGAACAGTAGTCAACTTCATGATGCATATAAGAACCGTCCCCATGGAGTAGGACCTAACACGTCCAGTGACAGGGGCTACATTCATGAAAATTTTGGCAGGGGTTATGATGAAGATCGTTTCTTGTATCAAAATGGTGGGAATAGGATTCTTCCTTCACCTCTGATGCTTGGAAAGGCTATATCTCCACAGTTTGCTACTTCTAGTGAATCTGCGTATCGTGCTGGAGCAGGTGATGAAAGGGCTGCTGAAAGTGATGAGAGACTAATTTATGAGGCAGCATTACAGGATATCAGTCAACCTAAAACAGAATATGACTTACCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGACCAGGGCCTTGGAAAGACAATTTCAATGATTTCCCTCATCCTGGCACAGAGGTCATTACAGTCAAAATCAAAAATAGATGATACATGCAGTCATAAAACTGAAGCTTTGAATTTGGACGATGATGATGACAATGGTAGTGTTGATGTGGAAAAGCATAAAAATAGTGAAGAATCTGATGATATAAAACCTAGTAGAGAACCAAGCAGTTCAACACAGGCACCTGGTAGAAAAAGGCCAGCTGCCGGTACACTAGTTGTCTGCCCTGCTAGTGTTCTTCGACAGTGGGCCAGGGAACTTGATGAAAAAGTTGGAGATGAAAAGCTTTCTGTTTTGGTTTATCATGGGGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAATTTGATGTGGTTCTAACAACATACTCTATTGTGACTAACGAAGTTCCCAAACAACCATTAGTTGAGGATGATGATATTGATGGAAAAAATGGGGAAAGATTTGGGTTATCCTCTGAGTTTTCTGTTAATAAAAAGAGGAAAAAGCCATTTAATGGAAATAAGAAGAGTAAAAAAGGTGGAAAGGGAATTGACAGTTCTTCTATTGAATGTGGTTCTGGCCCTCTTGCCAAAGTTGGTTGGTTTAGGGTTATTCTAGATGAGGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACTCCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGGTTCCTAAAGTATGATCCTTATGCTGTATACAAATCATTCTACAATACAATAAAAGTTCCAATATCCAAAAGTACTATTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCAATTTGCCTCCCAAGACAATTGAGCTAAGTAAGGTGGATTTTTCGATTGAGGAGCGAGCATTCTACACCAAATTGGAATCAGACTCGCGTCTTCAATTTAAGGCATATGCTGCTGCTGGGACAGTGAGCCAAAACTATGCTAATATTCTTTTAATGCTTTTACGTCTCCGACAGGCTTGTGACCACCCGCTTCTTGTTAAAGATTTTGATTCTGATCCTGTTGGGAAAGATTCTGTTGAAATGGCAAAAAATCTTCCAAGGGATATGCTGATTAATCTTTTTAATTGTTTGGAAGCAACATTTGCCATATGTCTTGTTTGCAATGATCCTCCTGAAGAGCCTGTTATTACGATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGAATATTTGACTGGTGATGATAACATGTGCCCTTCAGTTAATTGTAAAGAACTAATTGGCGACGATCTTGTTTTCTCCAAAGCTACTTTGAGAAGTTGCATCTCTGATGATGGTGGCAGTCTTAGTTCAGCAAATTCACATCTTTGTGATTATTCACTAGTGCAGCAGCGTGACTACACTTCATCTAAAATCAAAGCTGTTCTTGAGGTTCTGCAGTCAAATTGTAAATTGAAGATTTCTAGTTCTGACTTACCGAACTCCTCTGGAGGTTGTAGAGATTCACCGTCTTCGGATAATTTATATGTTGAAGACTGTGATTCAGATGTTAGGGTTACAAAACACACAATAAAGTATTCAGAGTCCACAACTGAAGGACCAATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGACTTAGTTGAGACATCATTGAGACAATTTAGTATACAGTACCGGAGACTTGATGGTAGGATGACTCTGGGTGCGAGGGACAAAGCTGTTAAGGATTTCAATACTGAACCTGAGATTGCTGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATACTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCACAGAATTGGGCAAACTCGTCCTGTTACTGTGACACGGATCACTATAAAAGATACAGTTGAAGATAGGATACTGGCTCTTCAGGAAGATAAGAGAAAAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTGGCGGTACTGGAACTCGCCTCACAGTAGATGATCTGAAGTATCTTTTCATGGTCTAG 3075 0.4052 MDGCIYISSSDDDLEEIDDQGRTLPQWATTTVKSSDNGGWSRRDSFSRGANSSNPSSSNVYNHSQVKPQTPPVSSTNTLNHRIARRDEPSYHAQNGNTSQHQTVNSRISNNHGADYEKMSSQQAFKRTLQSSLQPSATRALPSSFAPDSRLRNLKDSTNSSQLHDAYKNRPHGVGPNTSSDRGYIHENFGRGYDEDRFLYQNGGNRILPSPLMLGKAISPQFATSSESAYRAGAGDERAAESDERLIYEAALQDISQPKTEYDLPAGVLSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMISLILAQRSLQSKSKIDDTCSHKTEALNLDDDDDNGSVDVEKHKNSEESDDIKPSREPSSSTQAPGRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLVYHGGSRTKDPVELAKFDVVLTTYSIVTNEVPKQPLVEDDDIDGKNGERFGLSSEFSVNKKRKKPFNGNKKSKKGGKGIDSSSIECGSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISKSTIQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKTIELSKVDFSIEERAFYTKLESDSRLQFKAYAAAGTVSQNYANILLMLLRLRQACDHPLLVKDFDSDPVGKDSVEMAKNLPRDMLINLFNCLEATFAICLVCNDPPEEPVITMCGHVFCYQCVSEYLTGDDNMCPSVNCKELIGDDLVFSKATLRSCISDDGGSLSSANSHLCDYSLVQQRDYTSSKIKAVLEVLQSNCKLKISSSDLPNSSGGCRDSPSSDNLYVEDCDSDVRVTKHTIKYSESTTEGPIKAIVFSQWTSMLDLVETSLRQFSIQYRRLDGRMTLGARDKAVKDFNTEPEIAVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQEDKRKMVASAFGEDHAGGTGTRLTVDDLKYLFMV* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2531 1024 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 853 1019 IPR001650 -
Gso10g2531 1024 Gene3D - 245 335 IPR038718 -
Gso10g2531 1024 ProSitePatterns Zinc finger RING-type signature. 733 742 IPR017907 -
Gso10g2531 1024 Gene3D - 617 1023 IPR027417 -
Gso10g2531 1024 Pfam Helicase conserved C-terminal domain 867 966 IPR001650 -
Gso10g2531 1024 MobiDBLite consensus disorder prediction 110 187 - -
Gso10g2531 1024 MobiDBLite consensus disorder prediction 150 166 - -
Gso10g2531 1024 CDD SF2_C_SNF 867 975 - -
Gso10g2531 1024 SMART ring_2 718 756 IPR001841 -
Gso10g2531 1024 Gene3D - 465 615 IPR038718 -
Gso10g2531 1024 MobiDBLite consensus disorder prediction 337 383 - -
Gso10g2531 1024 MobiDBLite consensus disorder prediction 474 494 - -
Gso10g2531 1024 MobiDBLite consensus disorder prediction 23 77 - -
Gso10g2531 1024 CDD DEXDc_SHPRH-like 273 602 - -
Gso10g2531 1024 MobiDBLite consensus disorder prediction 21 77 - -
Gso10g2531 1024 Pfam SNF2-related domain 276 679 IPR000330 GO:0005524|GO:0140658
Gso10g2531 1024 SUPERFAMILY RING/U-box 716 762 - -
Gso10g2531 1024 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 43 1023 - -
Gso10g2531 1024 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 43 1023 - -
Gso10g2531 1024 Gene3D - 370 454 IPR038718 -
Gso10g2531 1024 Pfam Zinc finger, C3HC4 type (RING finger) 718 754 - -
Gso10g2531 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 602 IPR027417 -
Gso10g2531 1024 MobiDBLite consensus disorder prediction 110 143 - -
Gso10g2531 1024 SMART ultradead3 269 581 IPR014001 -
Gso10g2531 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 1023 IPR027417 -
Gso10g2531 1024 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 288 564 IPR014001 -
Gso10g2531 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 711 768 IPR013083 -
Gso10g2531 1024 MobiDBLite consensus disorder prediction 337 366 - -
Gso10g2531 1024 ProSiteProfiles Zinc finger RING-type profile. 718 754 IPR001841 -
Gso10g2531 1024 SMART helicmild6 883 966 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2531 Gso-Chr10 52288707 52300441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2531 1 924 RAD5 or RAD16-like Gene Family AT1G50410 55.390 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso10g2531 SNF2_N 1e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2531 - - gmx:100811598 1972.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0799 20 37406192 37417919 Gso10g2531 10 52288707 52300441 GST