Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2520 ATGTCGGAAGCACCACCGTCTCAGCCACCGCCTCCAACCGCCAACGCGTCACCACCGCCGTACTGGTGCTACCACTGCGAGAAGCGCGTCTCCATCGAAACGCTCGCGAATCTCCCCGACGTCGTCTGCGGTGAGTGCAAGAACGGCTTCGTGGAATCCATCCACACGCCGTCGCGCTCTCGCTCCCCCTCCGCCTCCTCCGACGACCCCTACTTCGGCTCGCAGTTCCTCCAGGTCCTTCGCCTAATCGCTCAGTCGGCGCGTGACGACGACGCGTCGCCTCCGCCGCCGCCAAGCCGCTCTCCGGAGAACGATTTCCTCAGGATCGAGCTCGGTGGCTGGGACAACGATGAGGAGAACGACAACGACAACAACGACGACGAGGAGTTCGAGGAACACGAGGAGGCGGAGGATCGCTCCGGCAACGAGGATCCGCACGGAAGAGACGACGAGGATCTGAGAAGAAGGAGGCGCGAGCTGCTTCGGCTTCGGATTAGGGATTTGGCGACGCGCACGAGGAGCATGCGGAACCGGATCTTGGATTGGGCCGAGATTCTGATGGGCCTTGAGGACAATTCCATCGAGTTCCGCCTCCAGCTGCCGGAATCCGACCGCTACGTCGGGAATCCCGAGGATTACGTCGACGCGGCGGAGTACGAGGCGCTGCTGCATACGCTTGCGGAAAGCGACGGCGGAGGTAGGAGAGGAGCGCCGCCGGCGTCGAAGGCGGCGGTGGAGGCGTTGCCGACGGTGAAGATTGCGTCCGAAAGCGAAGCCGTGGCGTGCGCTATATGTAAGGATTTGCTCGGTGTTGGAGACTTGGCGAAGAGGTTGCCGTGCGGGCATGGGTATCATGGAGATTGCATTGTTCCTTGGTTGAGTTCTCGAAATTCTTGCCCTGTTTGCAGGTATGAGCTACCAACGGATGATAAGGAATATGAGGAAGAGAGAGTGGTTAACTCTGCTTCGAGTTCCGGTGGAGGTGGAAGTGCCATTGTTTGA 1002 0.6058 MSEAPPSQPPPPTANASPPPYWCYHCEKRVSIETLANLPDVVCGECKNGFVESIHTPSRSRSPSASSDDPYFGSQFLQVLRLIAQSARDDDASPPPPPSRSPENDFLRIELGGWDNDEENDNDNNDDEEFEEHEEAEDRSGNEDPHGRDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWAEILMGLEDNSIEFRLQLPESDRYVGNPEDYVDAAEYEALLHTLAESDGGGRRGAPPASKAAVEALPTVKIASESEAVACAICKDLLGVGDLAKRLPCGHGYHGDCIVPWLSSRNSCPVCRYELPTDDKEYEEERVVNSASSSGGGGSAIV* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2520 333 MobiDBLite consensus disorder prediction 116 138 - -
Gso10g2520 333 Pfam Ring finger domain 262 303 IPR001841 -
Gso10g2520 333 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 35 324 - -
Gso10g2520 333 MobiDBLite consensus disorder prediction 113 151 - -
Gso10g2520 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 309 IPR013083 -
Gso10g2520 333 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 35 324 - -
Gso10g2520 333 SUPERFAMILY RING/U-box 257 309 - -
Gso10g2520 333 ProSiteProfiles Zinc finger RING-type profile. 262 303 IPR001841 -
Gso10g2520 333 Pfam zinc-ribbon 21 54 IPR039525 GO:0061630
Gso10g2520 333 SMART ring_2 262 302 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2520 Gso-Chr10 52205404 52206852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2520 173 315 C3H Transcription Factor Family AT5G01980 50.000 7.46e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2520 - - gmx:100802200 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0811 20 37530722 37532154 Gso10g2520 10 52205404 52206852 GST