Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2510 ATGTCTTCCGGCGGCGGCGGTGGTAAGCCGTTCTTCTGCCACGTGTGCAGTCAGAGGATTACGTGCTCCGATGAGTCGGAACCATTCTGCCCGATGTGTATGGAAAGTTTCGTAGAAGAATGCAACCCTAACAATCCCAACCCTAATCTCTTCCCCGACAGTGATGAATCTTCGGATCCCGAACTCCCCTTCCACCGCTTCTCACTTCTCCCTCTCTTGCTCTCATCAGTCTCTAGGTCCCGATCCGAACCCGACGTGTTCGACCCGATGGTCTTCCTCCAGAACCACCTTCAGGACCTTCGCGCCGACGGTGCCAACATTCAAGTTGACTTTGACCATCCTTCCAACGAGAATCAAGGCTTTCGCCTTGCGAACATCGGCGACTACTTTATGGGCCCCGGCCTCGAGCAGTTTATTCAGCAGCTTGCCGACAACGACCCCAACCGCTACGGAACGCCGCCCGCCGCCAAGGACGCCGTCGAGAATCTCCCCACCGTTACCGTCGACGACGACTTGCTGAACTCCGAGCTGAACCAGTGCGCTGTCTGCCAGGACGAGTTCGAAAAGGGTTCTAAGGTGACACAGATGCCCTGCAAGCACGCGTATCACGGCGACTGCTTGATTCCGTGGCTTCGGCTGCATAATTCATGCCCTGTGTGCCGCTATGAATTGCCCACGGACGACGCCGATTACGAGAACGAGGTTCACGGTGGTGATGCTGGGTCGAGGACAGGTGGGAGCGACGGTGGAGGTGGGAGTAATAGACCTTTTCGCAGGACTGTTAGGATATATTTGCGCCATCCTGATGCTGGTGACTCTGCGCAGGACGGTGCTGAAAGGGAATGGAGATGGGGAAGTTGA 861 0.5633 MSSGGGGGKPFFCHVCSQRITCSDESEPFCPMCMESFVEECNPNNPNPNLFPDSDESSDPELPFHRFSLLPLLLSSVSRSRSEPDVFDPMVFLQNHLQDLRADGANIQVDFDHPSNENQGFRLANIGDYFMGPGLEQFIQQLADNDPNRYGTPPAAKDAVENLPTVTVDDDLLNSELNQCAVCQDEFEKGSKVTQMPCKHAYHGDCLIPWLRLHNSCPVCRYELPTDDADYENEVHGGDAGSRTGGSDGGGGSNRPFRRTVRIYLRHPDAGDSAQDGAEREWRWGS* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2510 286 MobiDBLite consensus disorder prediction 233 286 - -
Gso10g2510 286 PANTHER OS06G0101300 PROTEIN 8 271 - -
Gso10g2510 286 Pfam Ring finger domain 178 221 IPR001841 -
Gso10g2510 286 MobiDBLite consensus disorder prediction 272 286 - -
Gso10g2510 286 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
Gso10g2510 286 SUPERFAMILY RING/U-box 159 227 - -
Gso10g2510 286 SMART ring_2 180 220 IPR001841 -
Gso10g2510 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 227 IPR013083 -
Gso10g2510 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2510 Gso-Chr10 52120867 52123529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2510 124 232 C3H Transcription Factor Family AT5G01980 47.706 6.93e-32 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2510 K11982 - gmx:100797586 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0822 20 37642057 37644757 Gso10g2510 10 52120867 52123529 GST