Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2506 ATGGAGAACGACACCGCCGCCGCCGCCGCTAACAATAACACCACCGCCGCCGCCGCCGCGAAAGCAGGTTCCGGAGGAGTGAAATCGAACAACCATAACCTAGAAGAGGAGCATTCCAATTTGAATGGCGAGGAGCAGATGGCAGAACAAGTGGAGGCAGAAGAAGAAGAAGAAGAAGAAGATCGACAAGCCGATGAAGGCGAAGGAGAAGAAACTGGATCTGCTGCGCCCAACCCGCGCCAACCTTCCAGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCTCTCGCTCGAACCCTTCAGGAGCAGGAAAGGGCATATATGATGCTGAGAATGAATAATGATGGAAGTGATTATGGAAGTTGGGAAGGTGGAAGCTATTTGCATGATGATGGGGATGATTTTGATGATCTACATGATGGCACTGATGTGGATGAGGATGAGGATGAGGATGATGATGAAGATGATGAAAATGAGGAGTATGAGGATGAAGATGCATTTGATGCCCATGCTCATGCTAGTGCTGGAGAACATGATAATCCCAGTATTGAATTTGACCCAGATCTATTTTCAAGTGATGAAGCATATGCAAGAGCATTACAAGAAGCCGAAGAGAGGGAAATGGCAGTTAGACTGTTGGCTCTTGCTGGGATAAATGATCGGGAGGAAGAGGACATAGAGGAGCATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATACGAGGAATTACTGGCATTGAGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTATTGCCTGTTTACCTTCAGTCAACTACAAGACTGGGAGTGATCAACATGGAAGCCATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGGTGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTTTGTAGTACTGAGGTATCTGCTTCTGGGAGCAACTTGTAG 1035 0.4696 MENDTAAAAANNNTTAAAAAKAGSGGVKSNNHNLEEEHSNLNGEEQMAEQVEAEEEEEEEDRQADEGEGEETGSAAPNPRQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDEDEDEDDDEDDENEEYEDEDAFDAHAHASAGEHDNPSIEFDPDLFSSDEAYARALQEAEEREMAVRLLALAGINDREEEDIEEHGANSQDAWEDVDPDELSYEELLALSEVVGTESRGLSTDTIACLPSVNYKTGSDQHGSHDSCVICRVDYEDGESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2506 344 MobiDBLite consensus disorder prediction 76 92 - -
Gso10g2506 344 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 42 342 - -
Gso10g2506 344 MobiDBLite consensus disorder prediction 139 167 - -
Gso10g2506 344 MobiDBLite consensus disorder prediction 116 167 - -
Gso10g2506 344 Coils Coil 147 167 - -
Gso10g2506 344 Coils Coil 31 68 - -
Gso10g2506 344 MobiDBLite consensus disorder prediction 1 92 - -
Gso10g2506 344 MobiDBLite consensus disorder prediction 48 67 - -
Gso10g2506 344 CDD RING-H2_PA-TM-RING 293 333 - -
Gso10g2506 344 MobiDBLite consensus disorder prediction 1 19 - -
Gso10g2506 344 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Gso10g2506 344 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 42 342 IPR043312 -
Gso10g2506 344 Pfam Ring finger domain 291 333 IPR001841 -
Gso10g2506 344 SMART ring_2 293 333 IPR001841 -
Gso10g2506 344 SUPERFAMILY RING/U-box 292 338 - -
Gso10g2506 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 340 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2506 Gso-Chr10 52100918 52105756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2506 70 237 C3H Transcription Factor Family AT3G19910 46.597 3.11e-38 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2506 K19045 - gmx:100306465 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0828 20 37668562 37675636 Gso10g2506 10 52100918 52105756 GST