Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2488 ATGGATTTTGATGAGTATGAGTATTTAGAGAACGCAGTTGAAAACCCTCAAGCTAAGCACAGGGCTAATGGTGGGGACAAAAGTGTGAAATCTGAAGAGAGAGGGCGGAATGGGAGTTCAAAGCATAAGGGTGATGATGATGATGATGTTGATCTCCATCCCAAGCATTCAAAACCTGGAGACGATTCTCATGATCGCGAGAGGCTCAGAGAAAAAAGAGGCTCATCCCGTCATGGTTCAAAGTCCAGAGATGGAGACAAGGACAGAAGCTCTGGGGGCATTAGGGATAGGAAGAGGGATAGGGACAGAGACCATGAGAACAAGGATAGGAAGAGAGACCATGGGGACAAGGATGTGAAGAGAGATAGGGAGAGAGACAGAGACCACGGTCGTGACCAAGAAAGGGACAGAAGGGACCGTGGGAGTGAGGCTGAGCGGCAACAGCGAAGCAGAAGTAGGTCTGATAGGCATCGAACTGATCTGGATGACAAAGACAGAGAGACAAGTCGTGACAGGGAGTATAGAGATATAGAGAGAAGCCGGGATAAGGATTACAAAGACAGAGGAAGGGTGAGGGAATCAAGGGAACGGGATAGACAAGACAGACGGCATAAAGAGAAAAAGGAAGAAGCAACAGAACCTGAGGCTGATCCTGAAAGAGATCAAAGGACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTATATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGATCGCAATTCAAGACGTTCCAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCGGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTAATGGACTCACTGGACTTATAGGCCCTTATTCTGGGGGAGCAAGAAAGCTGTATGTTGGCAATCTGCATATCAGTATTACTGAAGCTGATATTCGTAGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTAGGACAATCAAGGTATCAGCTGTTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGTGGCTTGTCCTTGAATGCATGTTCTCGAGCAATTCTCATGCAGAAGTTGGATCGTAGTGGTACTGCATCAAGCATGGTTGGTTCCATCGGTAATTCTGGTGTCAACAACACAGGTCTTAATCTACCTGCAACAGGAAACATACTCGCAGCTGCGCCTGTGGGTGGATTGGCAGGTGGAGGTCTCCAAATTCCCACGGCTACAATTCCTTCTATTGATCCAATCGGTGTTCCAAGTGAATGCTTAATGTTAAAGAATATGTTTGATCCCAAAGATGAGACTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCCGAATGCTCTAAGTTTGGGGCCTTAAAACACATATATGTTGATAAGAAGAGTGCTGGTTTTGTCTATTTACGATTTGAAGATACCCAATCTGCAATAAGTGCACAGCAGGCCTTGCACGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTGCCTCAGTCATACGAGGATAAATTCCCAGACAGCAGATAA 1794 0.4532 MDFDEYEYLENAVENPQAKHRANGGDKSVKSEERGRNGSSKHKGDDDDDVDLHPKHSKPGDDSHDRERLREKRGSSRHGSKSRDGDKDRSSGGIRDRKRDRDRDHENKDRKRDHGDKDVKRDRERDRDHGRDQERDRRDRGSEAERQQRSRSRSDRHRTDLDDKDRETSRDREYRDIERSRDKDYKDRGRVRESRERDRQDRRHKEKKEEATEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVANGLTGLIGPYSGGARKLYVGNLHISITEADIRRVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEVGGNTGDFDDDEGGGLSLNACSRAILMQKLDRSGTASSMVGSIGNSGVNNTGLNLPATGNILAAAPVGGLAGGGLQIPTATIPSIDPIGVPSECLMLKNMFDPKDETEPDFDLDIKEDVEAECSKFGALKHIYVDKKSAGFVYLRFEDTQSAISAQQALHGRWFAGKMITASFMVPQSYEDKFPDSR* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2488 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 327 404 IPR000504 GO:0003723
Gso10g2488 597 PANTHER CC1-LIKE SPLICING FACTOR 1 593 - -
Gso10g2488 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 503 586 IPR000504 GO:0003723
Gso10g2488 597 Gene3D - 498 597 IPR012677 -
Gso10g2488 597 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 593 - -
Gso10g2488 597 CDD RRM3_RBM39_like 502 584 - -
Gso10g2488 597 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 292 IPR000504 GO:0003723
Gso10g2488 597 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 329 398 IPR000504 GO:0003723
Gso10g2488 597 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 527 579 IPR000504 GO:0003723
Gso10g2488 597 SUPERFAMILY RNA-binding domain, RBD 216 315 IPR035979 GO:0003676
Gso10g2488 597 MobiDBLite consensus disorder prediction 1 220 - -
Gso10g2488 597 Gene3D - 154 308 IPR012677 -
Gso10g2488 597 SMART rrm1_1 224 296 IPR000504 GO:0003723
Gso10g2488 597 SMART rrm1_1 328 400 IPR000504 GO:0003723
Gso10g2488 597 SMART rrm1_1 504 582 IPR000504 GO:0003723
Gso10g2488 597 TIGRFAM SF-CC1: splicing factor, CC1-like family 95 595 IPR006509 GO:0003723|GO:0005634|GO:0006397
Gso10g2488 597 SUPERFAMILY RNA-binding domain, RBD 327 590 IPR035979 GO:0003676
Gso10g2488 597 CDD RRM1_RBM39_like 224 296 - -
Gso10g2488 597 Gene3D - 323 428 IPR012677 -
Gso10g2488 597 MobiDBLite consensus disorder prediction 20 220 - -
Gso10g2488 597 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 418 521 IPR029123 -
Gso10g2488 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 300 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2488 Gso-Chr10 51898168 51906840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2488 224 390 Eukaryotic Initiation Factors Gene Family AT4G34110 28.994 2.25e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2488 K13091 - gmx:100789839 1011.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0849 20 37953847 37963266 Gso10g2488 10 51898168 51906840 GST