Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2484 ATGGATATCAGTTTTTGTTTCTTCTGCTACTTCTGGTCTGTTTGTTCTTCAATTTTGCTCTTGCTTTTCTTGCTTTTAGTCAAAGGAAGTAACCATTGCCACTTTGCTTTTGCGAGCTCAAAGAGGAAGTTCCACTATCATCATCCAGGTGAGATGAACATCAGCATGCAACACTTAGTAGAGAGACTAAGACCCCTCGTGGGTTTGAACGGATGGGACTATTGCATCTACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAGCAATCAAAATGCTGGGGAAGAACATCTTTTCCCTGTCTCTTCTGTGGCTTCATGCAGAGATATCACTTATCCACACCCCAGAACAAAGCCCTGTGATCTTCTTTCACAGCTTTCCACTTGCATACCCATTGATAATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCCAACTGGGTGAACTATTCCAATGGCATGGATCCTAACATTTTGGAAGAAACAATTGGGACCCAGGTTTTGATTTCGGTGCCGGGTGGACTAGTTGAGCTGTTTGTAACTAAACAAGTGTCTGAAGATCATCAACTAATAGATTTTGTGACAAACCAGTGCATTGAAGCCGTGAACCACTCAATGAGCTTCAACATTGACGTGAGCAACATGCAATCAAACCCACTTATACAAGATGAAAACGAAGGGAACAACAACAGGAACAATAATCACTTATTCCATCCATCAGAACATGTCATCACTGATATGGACCACCGCAATATTGGTCTGTGTAATTCTCAACTGAACTTCATGCAGCAGTTCAACTACAACCAGCACAACAGAATGAAGAGCGATGCTGCTTTCTCTGAAGAATACCAAGCTGGTAATTCCTTCCTTCACGACGAGCAAACCAACCCAGAAGATGATCAGGAGCCTGGGCATGAGCATGACACGTATCAGAAAAGCCTCATGACAATAGATTCACAATACGTGGAGGCAAAAGATCAGAAGCAAGAGGAAGACAAGGACTTGATGAAAAACGTTGTTGGCAGATCAGATTCAATGTCAGATTGCAGTGACCAGAACGAAGAAGAGGAATTAGATGGAAAGTATAGGAGGAGGAATGGAAAAGGGAACCAATCCAAGAACCTTGTGGCTGAAAGAAAGAGAAGGAAGAAACTCAATGATAGGCTATATAACCTTCGTTCTTTGGTTCCTAGGATCTCTAAGCTGGATAGGGCATCCATTCTTGGAGATGCCATTGAGTATGTGAAGGATTTGCAGAAGCAAGTGAAGGAGCTCCAAGATGAGCTTGAGGAGAATGCAGACACTGAAAGCAACTGCATGAATATTGGTGTAGGTGCTGAACTTGGGCCAAATGCTGAACATGATAAGGCCCAAACTGGGTTGCATGTGGGAACATCAGGGAATGGATATGTCTCCAAACAAAAGCAGGAAGGTGCTACTGTCATTGATAAGCAGACCCAGCAGATGGAGCCGCAAGTGGAAGTGGCTCTGATAGATGAGAATGAGTATTTTGTGAAGGTTTTCTGTGAGCACAGGCCTGGTGGGTTTGTGAAACTGATGGAAGCGTTGAACACTATTGGCATGGATGTAGTGCATGCCACGGTAACCAGCCACACGGGACTCGTCTCAAATGTTTTTAAAGTGGAAAAAAAGGATAATGAAACGGTTGAGGCTGAAGATGTAAGAGACTCACTGCTAGAGCTTACGCGGAACCGTTATAGAGGGTGGACTCATGAGATGACAGCAACGCCGGAAAATGGGGTGGGAAGGGATCAACATCAACTTCACAACCACCAGCAGATAGGTGCCTACCCGCACCAGTTTCATAGTTAA 1869 0.4409 MDISFCFFCYFWSVCSSILLLLFLLLVKGSNHCHFAFASSKRKFHYHHPGEMNISMQHLVERLRPLVGLNGWDYCIYWKLSEDQRFLEWLGCCCAGTESNQNAGEEHLFPVSSVASCRDITYPHPRTKPCDLLSQLSTCIPIDNSGIHAQTLLTNQPNWVNYSNGMDPNILEETIGTQVLISVPGGLVELFVTKQVSEDHQLIDFVTNQCIEAVNHSMSFNIDVSNMQSNPLIQDENEGNNNRNNNHLFHPSEHVITDMDHRNIGLCNSQLNFMQQFNYNQHNRMKSDAAFSEEYQAGNSFLHDEQTNPEDDQEPGHEHDTYQKSLMTIDSQYVEAKDQKQEEDKDLMKNVVGRSDSMSDCSDQNEEEELDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCMNIGVGAELGPNAEHDKAQTGLHVGTSGNGYVSKQKQEGATVIDKQTQQMEPQVEVALIDENEYFVKVFCEHRPGGFVKLMEALNTIGMDVVHATVTSHTGLVSNVFKVEKKDNETVEAEDVRDSLLELTRNRYRGWTHEMTATPENGVGRDQHQLHNHQQIGAYPHQFHS* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2484 622 CDD ACT_UUR-ACR-like 517 580 - -
Gso10g2484 622 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 381 430 IPR011598 GO:0046983
Gso10g2484 622 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 146 590 - -
Gso10g2484 622 MobiDBLite consensus disorder prediction 352 392 - -
Gso10g2484 622 ProSiteProfiles ACT domain profile. 516 588 IPR002912 -
Gso10g2484 622 Pfam Helix-loop-helix DNA-binding domain 388 431 IPR011598 GO:0046983
Gso10g2484 622 CDD bHLH_AtAMS_like 384 449 - -
Gso10g2484 622 Gene3D - 373 446 IPR036638 GO:0046983
Gso10g2484 622 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 207 IPR025610 -
Gso10g2484 622 SMART finulus 387 436 IPR011598 GO:0046983
Gso10g2484 622 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 384 443 IPR036638 GO:0046983
Gso10g2484 622 Coils Coil 420 450 - -
Gso10g2484 622 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 146 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2484 Gso-Chr10 51859308 51862802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2484 52 595 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 46.655 5.01e-146 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g2484 bHLH-MYC_N 1.3e-18 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2484 - - gmx:100798282 1159.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0852 20 37994586 37997154 Gso10g2484 10 51859308 51862802 GST