Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2480 ATGGAAGCAAACAAACAGGGCTTCAAAATGTTATTGCTAAAAGGGGCAGTGATGGAATTCCAAAAAAGTATTCAGAGAACAATAACTTCGATGATTCTGAATTTCGTAGATGCAACAACGAAGTGTCTGAGAATGACTTCACCCTCTCTATCAGCAAGCCTTGCCAATTCTATTTACGTACCAAAGAAATTCATCAGAAGCCATGAGATGGATCATATAAATGAAGTGAAGCTGCAAGTTGGGAAGAGATCATGGAATGTGAAGCTAGACTGTTACGGTAGATTCACTTCGGGTTTGCATGATTTTTTGAGTCAATGTAATGTGGAGGCCGGAGATGTTTGTCACTTTGAGTTGATTGATAAGAAGAAATTTGTGTTTGAAGTTAGAGTTACGAGATGCATCAGCATCGATTGA 414 0.3865 MEANKQGFKMLLLKGAVMEFQKSIQRTITSMILNFVDATTKCLRMTSPSLSASLANSIYVPKKFIRSHEMDHINEVKLQVGKRSWNVKLDCYGRFTSGLHDFLSQCNVEAGDVCHFELIDKKKFVFEVRVTRCISID* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2480 137 Gene3D - 16 135 IPR015300 -
Gso10g2480 137 SMART B3_2 42 132 IPR003340 GO:0003677
Gso10g2480 137 SUPERFAMILY DNA-binding pseudobarrel domain 50 135 IPR015300 -
Gso10g2480 137 Pfam B3 DNA binding domain 55 129 IPR003340 GO:0003677
Gso10g2480 137 CDD B3_DNA 58 132 IPR003340 GO:0003677
Gso10g2480 137 ProSiteProfiles B3 DNA-binding domain profile. 43 132 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2480 Gso-Chr10 51827019 51827764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2480 25 132 REM Transcription Factor Family AT1G49480 30.508 1.14e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso10g2480 B3 1.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2480 - - gsj:114369510 251.136