Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2479 ATGGGTAGTTGTGGAAGAGAAGGAGCCGTGAGGCAATATGTAAGATCGAAGGTTCCTCGTTTAAGGTGGACTCCTGAGCTGCACCGTTGCTTTGTTCATGCTATTGATAGCCTTGGAGGTCATCATAAGGCTACTCCGAAGCTTGTTCTTCAGTTGATGGATGTTAAAGGGCTCACAATTTCACACGTCAAGAGCCATCTTCAGATGTACAGAAGCATGAGGGGTGACTTGGGCAGACAAGGTAGGACACCCTCCCAACATAGGAACCAATCTTTTGAGGAGCATGATGATGGATGTGTTGATGAAGTGAATGATGTTGGTGTTGAGTACTCATGTTCGAAACCCCTGGGAAGAGAATCTGATTCCTTCTTCGGGCACAGTAATCTCCCTCCAAAAAGAGCAAGAATCGAGATGAGAAGTTCCATCTCAGAGAGGCTGCAGCAATGCAGCCAAAGATTATGTGATGTTGTAGTTCCAAATCCGTACTGTTTTTATGATTATCTGAAACAGAAGAAGCCCATGCCCATGGCTGATCAGCATTCCCCTCCTTTTCCAGATTTTCCCAACCTCACTTCATTCAAATCTCCTGATCAACAATCTGATTTCCTTCAGGTTACTAAATTAAATGAAGGAAAAAGCACTTCACAGACTATTAATGTACTTGTGAACACTACTACTGAGACAGCTAATGTAGAAATTGAAGATGAATTGTCACTGTCGCTCACATTGCCAAATCCTTCACCTCAGAGAAGTTCAGGCAGTGAGATAAGTGAGGCAATCTCATCATGCCATGGGTTTAGCAACAACTACAAGGACTGCTCTAGTTCATCCACTCACACTGTCAAAGAAAGAATTAATTTGGACCTATCTTTAGCCCTATGTGGCAATTGA 891 0.4321 MGSCGREGAVRQYVRSKVPRLRWTPELHRCFVHAIDSLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDLGRQGRTPSQHRNQSFEEHDDGCVDEVNDVGVEYSCSKPLGRESDSFFGHSNLPPKRARIEMRSSISERLQQCSQRLCDVVVPNPYCFYDYLKQKKPMPMADQHSPPFPDFPNLTSFKSPDQQSDFLQVTKLNEGKSTSQTINVLVNTTTETANVEIEDELSLSLTLPNPSPQRSSGSEISEAISSCHGFSNNYKDCSSSSTHTVKERINLDLSLALCGN* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2479 296 Gene3D - 18 74 - -
Gso10g2479 296 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Gso10g2479 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 173 IPR044848 GO:0003700
Gso10g2479 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 178 296 IPR044848 GO:0003700
Gso10g2479 296 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 178 296 - -
Gso10g2479 296 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 173 - -
Gso10g2479 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Gso10g2479 296 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Gso10g2479 296 MobiDBLite consensus disorder prediction 76 96 - -
Gso10g2479 296 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2479 Gso-Chr10 51792147 51796450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2479 1 74 G2-like Transcription Factor Family AT1G14600 75.949 2.10e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso10g2479 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2479 - - gmx:100787188 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0860 20 38089345 38093671 Gso10g2479 10 51792147 51796450 GST