Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2473 ATGGCGGCGTCATCTTCCTCAGCATCGCTCTTTGGATTTAGAGAAGAGGATCAACAAAACCAGATGAAGCAACAGCATTCCCTGACACCATCCTCATCAACAACTCCAGCTGCACCCCCACCCCAGAAGAAAAAGAGAAACCAACCTGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACAACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAACACGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCTGATTGGAAAGCCCATTCTAAGACCTGTGGCACCAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCCAGGAGAGACAGTTTCATCACCCACAGGGCATTCTGTGATGCACTGGCTCAAGAGAGTGCAAGACAACCACCGAGCCTTAGCGGCGGCGGAATTGGTAGCCACCTGTACGGAAGCACTACCAATATGGCCTTAAACCTATCTCAGGTCGGTTCTCAGATACAAGACCCCAGCAACGCCCAACCCACCGAGCTCCTCCGCCTCGGCGCCACCTCCGGTCGAACCGGCCATTTCGACCACATCCTCGGTTCACCCTTCAGACCCTCCAACCAACAACAACAACCCTTCTTCATGTCCGAACAACCCAACCAAACCTACCACCACCCCGACCAAAACAAACCCTTCCAACAAGGGTTAATGCAGCAGTTGTCTGATCACCACCACCTTAACAACAACAATTCACCCTTCAACCTTCCTTTTCTCTCCAGCAACACAGCCAACGCTTCGTTCTCTGAACACTTCAACAATGCCAATGGAGGAGGCAACAACAACAACAACAACGAGGGCACTAACTACTTCGCTACTTCAAGTGCACCTTCTCTCTTCAGCAACAGTGCCAATGCCAATGCGAATGCGTTATCTCACATGTCTGCAACTGCACTGCTTCAGAAAGCAGCACAAATGGGTGCAACTTCGAGCAACGGCACCGCTTCGCTTTTGAAAAGCTTCGGAAGCGCGTCTTCCAGCAGCGGCGGCGGCTCAAAATCTGAACAACAACACAGGGTGCCACCACTGGTGAATGCTGCAAACTACGTTGGTGGAATGTTCGGAGGGAATCACGTGAACGAACAACAGAGTAACAGTAACCTCCAAGACCTGATGAACTCGTTCGCTGTTGGTGGAAACTCTTCCATTTTCGAAGCTGGTGGCTTTGAAGCATATGATCATAGTAATAACAATAATAATAGGGACCCAAAAGTGCTTGCAATGAGTGGAAGTAACAGCGTTGGAGGGTCTGATAGACTCACCCGCGATTTTCTGGGTGTTGGTCAGATAGTGAGGGGAATGAGTGGGAGTGGAGGGGTTGCACAGAGAGAACAACAACAGCAACATGGCTTCAACTTGAGTTCTTTGGAAGCTGAAAGAAATAATAATAATAATAATAATAGTAATAATGCTGCGCCGTCATCAGGGCAAGCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 1719 0.4887 MAASSSSASLFGFREEDQQNQMKQQHSLTPSSSTTPAAPPPQKKKRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPSLSGGGIGSHLYGSTTNMALNLSQVGSQIQDPSNAQPTELLRLGATSGRTGHFDHILGSPFRPSNQQQQPFFMSEQPNQTYHHPDQNKPFQQGLMQQLSDHHHLNNNNSPFNLPFLSSNTANASFSEHFNNANGGGNNNNNNEGTNYFATSSAPSLFSNSANANANALSHMSATALLQKAAQMGATSSNGTASLLKSFGSASSSSGGGSKSEQQHRVPPLVNAANYVGGMFGGNHVNEQQSNSNLQDLMNSFAVGGNSSIFEAGGFEAYDHSNNNNNRDPKVLAMSGSNSVGGSDRLTRDFLGVGQIVRGMSGSGGVAQREQQQQHGFNLSSLEAERNNNNNNNSNNAAPSSGQAFGGGGGNFQ* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2473 572 MobiDBLite consensus disorder prediction 1 56 - -
Gso10g2473 572 Gene3D Classic Zinc Finger 126 205 - -
Gso10g2473 572 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Gso10g2473 572 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
Gso10g2473 572 MobiDBLite consensus disorder prediction 540 572 - -
Gso10g2473 572 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 529 - -
Gso10g2473 572 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Gso10g2473 572 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 529 - -
Gso10g2473 572 SMART c2h2final6 113 143 IPR013087 -
Gso10g2473 572 SMART c2h2final6 148 168 IPR013087 -
Gso10g2473 572 SMART c2h2final6 72 94 IPR013087 -
Gso10g2473 572 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Gso10g2473 572 MobiDBLite consensus disorder prediction 1 33 - -
Gso10g2473 572 Gene3D Classic Zinc Finger 55 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2473 Gso-Chr10 51714636 51721034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2473 42 524 IDZ Gene Family AT2G02070 48.639 7.10e-137 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g2473 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2473 K25870 - gmx:100786121 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0867 20 38179601 38186479 Gso10g2473 10 51714636 51721034 GST