Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2455 ATGTTTCAGGAGAGCAGCGTGACGCGGTGGCCGACTCAGTGGACTCGCTACCACGACAAGCTATTCGAGCGGGCCCTTCTGGTCGTGCCGGAGGATCTGCCGGACCGGTGGGAGAAGATCGCCGACCAGGTTCCCGGCAAGTCGGCGGTGGAGGTAAGGGAACACTACGAGGCCCTCGTCCACGACGTCTTCGAGATCGACTCCGGCCGAGTCGAGGTCCCGAGTTACGTCGATGACTCGGTGGCGATGCCGCTCAGTGGCGGTGCTGGAATTTCTACGTGGGACAACGCTAATCAGATCTCATTCGGTTCCAAGCTTAAACAACAAGGCGAGAACGAAAGGAAGAAGGGCACGCCTTGGACTGAAGAGGAACACAGGCTGTTTCTCATTGGGCTTAGTAAGTTTGGGAAGGGAGATTGGAGAAGCATTTCAAGAAATGTTGTTGTGACAAGAACACCAACTCAAGTAGCTAGCCATGCCCAGAAATACTTTCTTCGCCAGAATTCGGTGAAGAAAGAGAGGAAGAGATCAAGCATTCATGACATAACGACTGTGGACAGTAACTCAGCGCCTATGCCCATTGATCAGACTTGGGTTCCTCCTCCGGGTGGTTCAGTGCAGCAGTCACAGCAATACCCATCAAGCAACATGCATGATCAAATGGGTACATTTGGGTATTCAAACTATGGCTTTGACATGTAA 702 0.5256 MFQESSVTRWPTQWTRYHDKLFERALLVVPEDLPDRWEKIADQVPGKSAVEVREHYEALVHDVFEIDSGRVEVPSYVDDSVAMPLSGGAGISTWDNANQISFGSKLKQQGENERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSAPMPIDQTWVPPPGGSVQQSQQYPSSNMHDQMGTFGYSNYGFDM* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2455 233 Gene3D - 118 170 - -
Gso10g2455 233 ProSiteProfiles SANT domain profile. 115 168 IPR017884 -
Gso10g2455 233 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 11 233 IPR043363 -
Gso10g2455 233 CDD SANT 119 164 IPR001005 -
Gso10g2455 233 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 115 167 IPR006447 GO:0003677
Gso10g2455 233 SUPERFAMILY Homeodomain-like 12 68 IPR009057 -
Gso10g2455 233 Gene3D - 8 73 - -
Gso10g2455 233 ProSiteProfiles Myb-like domain profile. 14 60 IPR001005 -
Gso10g2455 233 ProSiteProfiles Myb-like domain profile. 112 164 IPR001005 -
Gso10g2455 233 SUPERFAMILY Homeodomain-like 114 169 IPR009057 -
Gso10g2455 233 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 11 233 - -
Gso10g2455 233 CDD SANT 14 60 IPR001005 -
Gso10g2455 233 Pfam Myb-like DNA-binding domain 119 164 IPR001005 -
Gso10g2455 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 168 IPR017930 -
Gso10g2455 233 SMART sant 10 62 IPR001005 -
Gso10g2455 233 SMART sant 116 166 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2455 Gso-Chr10 51585326 51587016 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso10g2455 Myb_DNA-binding 4.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2455 - - gmx:548010 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0887 20 38360375 38362390 Gso10g2455 10 51585326 51587016 GST